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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttaaccaacaagtaagcttttttttttctttctttcttttgaattactcttccttctataaattattattatatcactcttctggtgtgtatttacagGAGGTACTGCTCCCTGGTGGTCATGGTCTTATGGTCCGTGGCTACTTGCCTGTTGTAAATAGCCTAGCCAAGGGTCTTGATATTCGATTGGGGCACAG

Basic information

species Glycine max
transcript GLYMA08G41570.3
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G41570.3 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os04g53190.1 (Oryza sativa), 3'ss of exon 8
-------tcttaaccaacaagtaagct-tttttttttctttctttcttttgaattactcttccttctataaattat-tattatatcactcttctggtgtgtatttacagGAGGTACTGCTCCCTGGTGGTCATGGTCTTATGGTCCGTGGCTACTTGCCTGTTGTAAATAGCCTAGCCAAGGGTCTTGATATTCGATTGGGGCACAG
       | |    |   |  | ||||    ||     | | || ||  |||  ||||| | ||  | | | |  | | |   ||     | |||   |||   | |||||||||||||| |||||||| |||||||| ||||| ||||| ||    || ||  ||||||  || || || || || ||||| ||  | || |||||
gtaggactttggttcctgatatcagctacaattgccaatattttgctcatgatgtactcatgctagtttgattgctatgtctcatgttcgtactgtgctgtgggtgcagGAGGTACTGCTTCCTGGTGGCCATGGTCTCATGGTTCGTGGATATCGTCCAGTAATAAATACTCTGGCAAAAGGCCTAGATATACGCCTTGGCCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7673728|gb|AW160135.1|AW160135
EST:     GCTGGTTTGCTGCAGACACTGATGCTATTTCACTGAAAGGATGGGACCAG                         GAGGTACTGCTCCCTGGTGGTCATGGTCTTATGGTCCGTGGCTACTTGCCT
genomic: GCTGGTTTGCTGCAGACACTGATGCTATTTCACTGAAAGGATGGGACCAGgtaatttcaa ... gtatttacagGAGGTACTGCTCCCTGGTGGTCATGGTCTTATGGTCCGTGGCTACTTGCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactcttccttctataaattattattatatcactcttctggtgtgtatttacagGAGGTACTGCTCCCTGGTGGTCATGGTCTTATGGTCCGTGGCTACTTGCCTGTTGTAAATAGCCTAGCCAAGGGTCTTGATATTCGATTGGGGCACAG
          ttctataaattattat  TA-rich tract