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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttgttttcacaaacttctgtttatatggtctctttgtgcttgcctgtggcattgtttataacatgcatctgatcattatacagAAATTCCGCCTTCATCTGTTACTAAATGCAGATAGGGAGTTTCTGGCTCAGAAGGGTGCACCCCACCGAGATTTTTACAATATCAGAAAAGTTGATACTC

Basic information

species Glycine max
transcript GLYMA08G40690.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G40690.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv01s0026g01480.t01 (Vitis vinifera), 3'ss of exon 6
gtatgttttgttttcacaaacttctgtttatatggtctctttgtgcttgcctgtggcat-tgtttataacatgcatctgatcattatacagAAATTCCGCCTTCATCTGTTACTAAATGCAGATAGGGAGTTTCTGGCTCAGAAGGGTGCACCCCACCGAGATTTTTACAATATCAGAAAAGTTGATACTC
    ||  ||||||   ||  | || | ||  |   |  | |||  ||     |||| | |||||||||| |  | |||| || |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| || || ||||| ||||| || ||||| |||||||| |
----gtggtgtttttcaaacttcctttctacttttacattgtgttattaatattggcctgtgtttataacttataactgaacaatatacagAAATTCCGCCTTCATCTGTTAGTAAATGCAGATCGGGAGTTTCTGGCTCAGAAGAGTGCACCACATCGCGATTTCTACAACATTAGAAAGGTTGATACAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctttgtgcttgcctgtggcattgtttataacatgcatctgatcattatacagAAATTCCGCCTTCATCTGTTACTAAATGCAGATAGGGAGTTTCTGGCTCAGAAGGGTGCACCCCACCGAGATTTTTACAATATCAGAAAAGTTGATACTC
                      attgtttataacat  TA-rich tract