Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacttaaatccatgtcaacaaaagataatgtaacgtgcaaaataatcctgaatttttttttatagactgaaaatcatttccttcttctgtgatcatacagTGAATTCATAGAGCACTGGGTCCAAATTTGCACTCCAGCAAAGTCCAAGGTTAAAACAGAAGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGC

Basic information

species Glycine max
transcript GLYMA08G39510.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7284423|gb|AW597014.1|AW597014
EST:     GGAGGTATAAAGGGCCTAATGTCTATCCCAGATGATGGGACCACTGCAAG                         TGAATTCATAGAGCACTGGGTCCAAATTTGCACTCCAGCAAAGTCCAAGGT
genomic: GGAGGTATAAAGGGCCTAATGTCTATCCCAGATGATGGGACCACTGCAAGgtaaaagttt ... gatcatacagTGAATTCATAGAGCACTGGGTCCAAATTTGCACTCCAGCAAAGTCCAAGGT
EST: gi|192309131|gb|FG999400.1|FG999400
EST:     GGAGGTATAAAGGGCCTAATGTCTATCCCAGATGATGGGACCACTGCAAG                         TGAATTCATAGAGCACTGGGTCCAAATTTGCACTCCAGCAAAGTCCAAGGT
genomic: GGAGGTATAAAGGGCCTAATGTCTATCCCAGATGATGGGACCACTGCAAGgtaaaagttt ... gatcatacagTGAATTCATAGAGCACTGGGTCCAAATTTGCACTCCAGCAAAGTCCAAGGT
EST: gi|20813035|gb|BQ297513.1|BQ297513
EST:     GGAGGTATAAAGGGCCTAATGTCTATCCCAGATGATGGGACCACTGCAAG                         TGAATTCATAGAGCACTGGGTCCAAAATTGCACTCCAGCAAAGTCCAAGGT
genomic: GGAGGTATAAAGGGCCTAATGTCTATCCCAGATGATGGGACCACTGCAAGgtaaaagttt ... gatcatacagTGAATTCATAGAGCACTGGGTCCAAATTTGCACTCCAGCAAAGTCCAAGGT
EST: gi|19271202|gb|BM887458.1|BM887458
EST:     GGAGGTATAAAGGGCCTAATGTCTATCCCAGATGATGGGACCACTGCAAG                         TGAATTCATAGAGCACTGGGTCCAAATTTGCACTCCAGCAAAGTCCAA
genomic: GGAGGTATAAAGGGCCTAATGTCTATCCCAGATGATGGGACCACTGCAAGgtaaaagttt ... gatcatacagTGAATTCATAGAGCACTGGGTCCAAATTTGCACTCCAGCAAAGTCCAA
EST: gi|192305002|gb|FG997128.1|FG997128
EST:     GGAGGTATAAAGGGCCTAATGTCTATCCCAGATGATGGGACCACTGCAAG                         TGAATTCATAGAGCACTGGGTCCAAATTTGCACTCCAGCAAAGTCCAAGGT
genomic: GGAGGTATAAAGGGCCTAATGTCTATCCCAGATGATGGGACCACTGCAAGgtaaaagttt ... gatcatacagTGAATTCATAGAGCACTGGGTCCAAATTTGCACTCCAGCAAAGTCCAAGGT
EST: gi|192309132|gb|FG999401.1|FG999401
EST:     GGAGGTATAAAGGGCCTAATGTCTATCCCAGATGATGGGACCACTGCAAG                         TGAATTCATAGAGCACTGGGTCCAAATTTGCACTCCAGCAAAGTCCAAGGT
genomic: GGAGGTATAAAGGGCCTAATGTCTATCCCAGATGATGGGACCACTGCAAGgtaaaagttt ... gatcatacagTGAATTCATAGAGCACTGGGTCCAAATTTGCACTCCAGCAAAGTCCAAGGT
EST: gi|192297727|gb|FG989962.1|FG989962
EST:     GGAGGTATAAAGGGCCTAATGTCTATCCCAGATGATGGGACCACTGCAAG                         TGAATTCATAGAGCACTGGGTCCAAATTTGCACTCCAGCAAAGTCCAAGGT
genomic: GGAGGTATAAAGGGCCTAATGTCTATCCCAGATGATGGGACCACTGCAAGgtaaaagttt ... gatcatacagTGAATTCATAGAGCACTGGGTCCAAATTTGCACTCCAGCAAAGTCCAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgaatttttttttatagactgaaaatcatttccttcttctgtgatcatacagTGAATTCATAGAGCACTGGGTCCAAATTTGCACTCCAGCAAAGTCCAAGGTTAAAACAGAAGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGC
                               tttccttcttctgtg  CT-rich tract
     aatttttttttataga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cacttaaatccatgtcaacaaaagataatgtaacgtgcaaaataatcctgaatttttttttatagactgaaaatcatttccttcttctgtgatcatacagTGAATTCATAGAGCACTGGGTCCAAATTTGCACTCCAGCAAAGTCCAAGGTTAAAACAGAAGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - catgtca
- - - - - - - - - -aaaagata
- - - - - - - - - - - - - - - -aacgtgc
- - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - -tcctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gactgaa