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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgacatggttatgtttggaattttttttctatttgtattgctttgtgtatatcaatgaagtatccatgttacagctgaaataaatgttttgctgtattacagATGAACCATCTCAAAATGGAAGTTCAGTACATGCTCCTCAAAATGGGGTACATAATAGACCTCAGACAGTTGTTAATCAAACTATGTCTATCTTACCTAT

Basic information

species Glycine max
transcript GLYMA08G34280.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925033|gb|AW831059.1|AW831059
EST:     GATTCTCAATTGAAATCAAGGGAGAGGCAGGACTCTTTTGAAG                         ATGAACCATCTCAAAATGGAAGTTCAGTACATGCTCCTCAAAATGGGGTAC
genomic: GATTCTCAATTGAAATCAAGGGAGAGGCAGGACTCTTTTGAAGgtctgacatg ... tgtattacagATGAACCATCTCAAAATGGAAGTTCAGTACATGCTCCTCAAAATGGGGTAC
EST: gi|21676139|gb|BQ628490.1|BQ628490
EST:     GATTCTCAATTGAAATCAAGGGAGAGGCAGGACTCTTTTGAAG                         ATGAACCATCTCAAAATGGAAGTTCAGTACATGCTCCTCAAAATGGGGTAC
genomic: GATTCTCAATTGAAATCAAGGGAGAGGCAGGACTCTTTTGAAGgtctgacatg ... tgtattacagATGAACCATCTCAAAATGGAAGTTCAGTACATGCTCCTCAAAATGGGGTAC
EST: gi|193450723|gb|FK411261.1|FK411261
EST:     GATTCTCAATTGAAATCAAGGGAGAGGCAGGACTCTTTTGAAG                         ATGAACCATCTCAAAATGGAAGCTCAGTACATGCTCCTCA
genomic: GATTCTCAATTGAAATCAAGGGAGAGGCAGGACTCTTTTGAAGgtctgacatg ... tgtattacagATGAACCATCTCAAAATGGAAGTTCAGTACATGCTCCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatcaatgaagtatccatgttacagctgaaataaatgttttgctgtattacagATGAACCATCTCAAAATGGAAGTTCAGTACATGCTCCTCAAAATGGGGTACATAATAGACCTCAGACAGTTGTTAATCAAACTATGTCTATCTTACCTAT
                                       ttttgct  CT-rich tract
                            tgaaataaatgtttt  TA-rich tract