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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtggaaattgactgatgtagatataaatgcttttttttttttaatcttttgttttattttattgtttacatgttaaactcttctaatttataatatgtagGGAAAAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAG

Basic information

species Glycine max
transcript GLYMA08G33560.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G33560.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 3'ss of exon 7
---------------------------gtggaaattgactgatgtagatataaatgcttttttttttttaatcttttgttttatttt-------attgtt-tac----atgttaaactcttctaatt-tataatatgtagGGAAAAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAG
                            |||| |      | | ||          || | | | | |   ||| |   ||| |          |||| | |||    ||| |  | |      |||  ||    || ||| || || ||||||||||| || |||||||| || |||||||||||||||
gtatggtgctaataatctgttcttagcttggagacatcacgttttactctctctctctctctctctctctctctctctctttttccccaaaacaattgctataccaaaatgattgattgcatggattacatgccttgcagGAAAGAAATTCTGGAATTTATTCCACTTGCAGCCCATGCGTGACCAAAAG

upper sequence: GLYMA08G33560.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ32904 (Selaginella moellendorffii), 3'ss of exon 8
gtggaaattgactgatgtagatataaatgcttttttttttttaatcttttgttttattttattgtttacatgttaaactcttctaatttataatatg-tagGGAAAAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAG
                                               | ||   ||| |  | ||  || | |    ||  | |  ||   ||| |  |||||||    |||||||||||||||||||||||||| ||| | ||| | |||
----------------------------------------------gtatgcactatctgttcgtgaac-tctcctcctaatgttcttgtcaatttaatagGGAAGCCTTTCTGGAATTTGTTTCACTTGCAACCCATGAGAGACAACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31306491|gb|CD391694.1|CD391694
EST:     CAGAGAACAAAGGGAAATCACTGTACAGTTGATAAACTATACTAAGAGTG                         GGAAAAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAG
genomic: CAGAGAACAAAGGGAAATCACTGTACAGTTGATAAACTATACTAAGAGTGgtaaataact ... taatatgtagGGAAAAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttgttttattttattgtttacatgttaaactcttctaatttataatatgtagGGAAAAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAG
                                   ttctaat  putative branch site (score: 2)
      ttttattttattgttt  TA-rich tract