1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtgcactactgctgagcaagttttttatatgtcgatggtttttataatcataatctttatacaccatactataaataaaatactaatgtgcatctgcagGGAGATTTCTGGTGTATTGGTTGGCAAAATAGTGGGACACAATCAAGAGATAGCAAAAATATGACTTTATTGGGAG
species | Glycine max |
transcript | GLYMA08G29040.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAAATGGGCTCTCGTTGAAGGTTTATCCACATGATTATTTATTTCCCTCT GGAGATTTCTGGTGTATTGGTTGGCAAAATAGTGGGACACAATCAAGAGAT
genomic: AAAATGGGCTCTCGTTGAAGGTTTATCCACATGATTATTTATTTCCCTCTgtaagtatat ... gcatctgcagGGAGATTTCTGGTGTATTGGTTGGCAAAATAGTGGGACACAATCAAGAGAT
taatcataatctttatacaccatactataaataaaatactaatgtgcatctgcagGGAGATTTCTGGTGTATTGGTTGGCAAAATAGTGGGACACAATCAAGAGATAGCAAAAATATGACTTTATTGGGAG
tactaat putative branch site (score: 1)
tttatacaccatacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgcactactgctgagcaagttttttatatgtcgatggtttttataatcataatctttatacaccatactataaataaaatactaatgtgcatctgcagGGAGATTTCTGGTGTATTGGTTGGCAAAATAGTGGGACACAATCAAGAGATAGCAAAAATATGACTTTATTGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- tgcacta
- - - - -ctgctga
- - - - - - - - - - - - - - - - - gatggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa