1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cttgcaatttgaagaatatagggttttgatgtgcatggaatactttatgagggttaaaagctattattgtatactaaatgattttcttgttaatggacagGCTTGGAGGGTTCAGATGCAGGTCTAGCATCTGTGCTGGAGTCCCTGGAGTTCTGTTTGAAACTTCGTGGTTCTGAAGCTAGTGTGTTGGAAGATTTATT
species | Glycine max |
transcript | GLYMA08G27740.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGCACTTCACTATCCTGCTG GCTTGGAGGGTTCAGATGCAGGTCTAGCATCTGTGCTGGAGTCCCTGGAGTEST: gi|51334977|gb|CO978843.1|CO978843
genomic: CTGCACTTCACTATCCTGCTGgtgagtatat ... taatggacagGCTTGGAGGGTTCAGATGCAGGTCTAGCATCTGTGCTGGAGTCCCTGGAGT
EST: AGCAATTCCATCAATATGTCGCGTTTCAGCTGCACTTCACTATCCTGCTG GCTTGGAGGGTTCAGATGCAGGTCTAGCATCTGTGCTGGAGTCCCTGGAGTEST: gi|207847167|gb|GD820814.1|GD820814
genomic: AGCAATTCCATCAATATGTCGCGTTTCAGCTGCACTTCACTATCCTGCTGgtgagtatat ... taatggacagGCTTGGAGGGTTCAGATGCAGGTCTAGCATCTGTGCTGGAGTCCCTGGAGT
EST: AGCAATTCCATCAATATGTCGCGTTTCAGCTGCACTTCACTATCCTGCTG GCTTGGAGGGTTCAGATGCAGGTCTAGCATCTGTGCTGGAGTCCCTGGAGT
genomic: AGCAATTCCATCAATATGTCGCGTTTCAGCTGCACTTCACTATCCTGCTGgtgagtatat ... taatggacagGCTTGGAGGGTTCAGATGCAGGTCTAGCATCTGTGCTGGAGTCCCTGGAGT
tatgagggttaaaagctattattgtatactaaatgattttcttgttaatggacagGCTTGGAGGGTTCAGATGCAGGTCTAGCATCTGTGCTGGAGTCCCTGGAGTTCTGTTTGAAACTTCGTGGTTCTGAAGCTAGTGTGTTGGAAGATTTATT
ttttcttgtt CT-rich tract
tattattgtatactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgcaatttgaagaatatagggttttgatgtgcatggaatactttatgagggttaaaagctattattgtatactaaatgattttcttgttaatggacagGCTTGGAGGGTTCAGATGCAGGTCTAGCATCTGTGCTGGAGTCCCTGGAGTTCTGTTTGAAACTTCGTGGTTCTGAAGCTAGTGTGTTGGAAGATTTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
cttgcaa
- - - - - - - - - - -ggttttg
- - - - - - - - - - - - - - - - gcatgga