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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatatgatcaattaattacttttctgtaatttgtgatttgaactataattttaatgtgccccttttgttcagTCCTGATTACAGGTACAATGATGTAGCTTCAGATCAGATAACTGCCACAACTCAACCTCAACAAGTGAGTGGCTTTATTCCAGGGTGGATGCTGTGAAAT

Basic information

species Glycine max
transcript GLYMA08G27670.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6951912|gb|AW423980.1|AW423980
EST:     CATTGCAGATTGG                         TCCTGATTACAGGTACAATGATGTAGCTTCAGATCAGATAACTGCCACAAC
genomic: CATTGCAGATTGGgtaatatatg ... ttttgttcagTCCTGATTACAGGTACAATGATGTAGCTTCAGATCAGATAACTGCCACAAC
EST: gi|193529981|gb|FK484080.1|FK484080
EST:     CATCAGGGCTTCTTCCAGCCATTGGAATGCAACCCTACATTGCAGATTGG                         TCCTGATTACAGGTACAATGATGTGGCTTCAGATCAGATAACTGCCACAAC
genomic: CATCAGGGCTTCTTCCAGCCATTGGAATGCAACCCTACATTGCAGATTGGgtaatatatg ... ttttgttcagTCCTGATTACAGGTACAATGATGTAGCTTCAGATCAGATAACTGCCACAAC
EST: gi|9984978|gb|BE659086.1|BE659086
EST:     CAGCCATTGGAATGCAACCCTACATTGCAGATTGG                         TCCTGATTACAGGTACAATGATGTAGCTTCAGATCAGATAACTGCCACAAC
genomic: CAGCCATTGGAATGCAACCCTACATTGCAGATTGGgtaatatatg ... ttttgttcagTCCTGATTACAGGTACAATGATGTAGCTTCAGATCAGATAACTGCCACAAC
EST: gi|193526846|gb|FK485044.1|FK485044
EST:     CTACATTGCAGATTGG                         TCCTGATTACAGGTACAATGATGTAGCTTCAGATCAGATAACTGCCACAAC
genomic: CTACATTGCAGATTGGgtaatatatg ... ttttgttcagTCCTGATTACAGGTACAATGATGTAGCTTCAGATCAGATAACTGCCACAAC
EST: gi|207820113|gb|GD792427.1|GD792427
EST:     CATCAGGGCTTCTTCCAGCCATTGGAATGCAACCCTACATTGCAGATTGG                         TCCTGATTACAGGTACAATGATGTAGCTTCAGATCAGATAACTGCCACAAC
genomic: CATCAGGGCTTCTTCCAGCCATTGGAATGCAACCCTACATTGCAGATTGGgtaatatatg ... ttttgttcagTCCTGATTACAGGTACAATGATGTAGCTTCAGATCAGATAACTGCCACAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttttctgtaatttgtgatttgaactataattttaatgtgccccttttgttcagTCCTGATTACAGGTACAATGATGTAGCTTCAGATCAGATAACTGCCACAACTCAACCTCAACAAGTGAGTGGCTTTATTCCAGGGTGGATGCTGTGAAAT
                               ttttaat  putative branch site (score: 3)
                                       tgccccttttgttc  CT-rich tract
         taatttgtgatttgaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatatatgatcaattaattacttttctgtaatttgtgatttgaactataattttaatgtgccccttttgttcagTCCTGATTACAGGTACAATGATGTAGCTTCAGATCAGATAACTGCCACAACTCAACCTCAACAAGTGAGTGGCTTTATTCCAGGGTGGATGCTGTGAAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG