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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcatttttgctttcatgctacttattaatatatttgtactgggagaaaaagatgcacctggtgcattcctaaaaaagtattcctgaaaatggctatttatttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTG

Basic information

species Glycine max
transcript GLYMA08G24000.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os06g39870.1 (Oryza sativa), 3'ss of exon 5
gtttgcatttttgctttcatgctacttattaatatatttgtactgggagaaaaaga-tgcac-ctggtgcattcctaaaaaagt------attcctgaaaatggctatttatttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTG
               |   ||  | | | |  | | ||| | |||  || |  ||| | ||  ||  | |||  |   |  |||       || || ||        |||  |  ||||||| ||  | ||||| ||||| || |||||||||| |||||| || |||||||||||||||||||| |||||||| |||||||||||||| |||||||| |
--------------gtaagtggcaatcacttcttttttttttctgcaagcagcagagttcatgctacttcatctcgtcatcagttctttagttacttaatcgcatctttttctcctgcagTCCCGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGTGGCATTGATCTGAAAAAGATTGCAGAGAAGATGAATGGGGCATCTGGAG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os02g11050.1 (Oryza sativa), 3'ss of exon 7
gtttgcatttttgctttcatgctacttattaatatatttgtactgggagaaaaagatgcacctggtgcattcctaaaaaagtattcctgaaaatggctatttatt-tatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTG
               |   ||||  | | | |    | | || ||   |    |  |   ||   ||  ||| |      || ||  |||    |  ||| | ||   | ||||| ||  | ||||| ||||| || |||||||||| |||||| || |||||||| ||||||||||| ||||| || || ||||||||||| || || || |
--------------gtaagtgctgataacttac---tgtatattgtttgtgttaatttttcc--atgatttctt------gtgttgatgatg-cgcttatcttttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGTGGTATTGATCTGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G107362_T04 (Zea mays), 3'ss of exon 7
gtttgcatttttgctttcatgctacttattaatatatttgtactgggagaaaaagatgcacctggtgcattcctaaaaaagtattcctgaaaatggctatttatttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTG
               |   |    || | | ||    || |||  |  ||     |     ||  |||  | || | |  |   |        |     |||     ||||||| ||  | ||||| ||||| ||||||||||||| |||||| || |||||||||||||||||||| ||||| || || ||||||||||| || || || |
--------------gtatgtttggctaactcatcctgttatacctgttgatttt-acatggctactgc--tgctgacagggcgct--------taatcttttgcccttgcagTCACGTTTCGATATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGTGGCATTGATCTGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G137528_T01 (Zea mays), 3'ss of exon 7
gtttgcatttttgctttcatgctacttattaatatatttgtactgggagaaaaagatgcacctggtgcattcctaaaaaagtattcctgaaaatggctatttatttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTG
               |   | |  || | | ||    || |||  |  ||     ||    ||  | |  | || | |  ||  |        |  |  |||     ||||||| ||  | |||||| |||| ||||||||||| | |||||| || |||||||| || |||||||| ||||| || || ||||||||||| || || || |
--------------gtatgttcggctaactcatcctgttataccagttgatctt-atatggctactcc--tgctgacagggtgct--------taacctttttcccctgcagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTGGTATCGATCTGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G20000.1 (Arabidopsis thaliana), 3'ss of exon 7
---------------------------------------------------gtttgcatttttgct---ttcatgctacttattaatatatt-tgtactgggagaaaaagat------gcacctggtgcattcctaaaaaagtat-----tcctgaaaatggctatttat------ttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTG
                                                     | |||  ||||||   | | |  |  ||  |||  |||  | ||||| |  ||| |  |        || |  || |  |  |   | | |      |   |  ||||  ||||| |      |  ||||||| ||  | ||||| ||||| || || ||||| | ||||||||| |||||||| || |||||||| |||||||| |||||||||||||| || || ||||
gtaatgcttgtgtttcttaggacatgatattagaaataactttaaacttgaagtagcaactttgctcactccgttgtttttggtaaactatcatttactgcgtaaaatacttttctccatacttattgtacccaaagtgaggcaggacggtttggctaatgtatatttctaatatgtgttgcagTCACGTTTTGATATCTTGAAGATACACTCAAGGAAAATGAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGTGCTTCAGGTG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G19990.1 (Arabidopsis thaliana), 3'ss of exon 7
----------------------------------------------------------------------------------gtttgcatttttgctttcatgctacttattaatatatttgtactgggagaaaaagatgcacctggtgcattcctaaaaaagtattcctgaaaatggctattt-----atttat-gcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTG
                                                                                   || | ||||   || ||||  | |    ||| | | || |  |   |     | |  ||  |    ||        |      |   |  ||||  | |||     || | | |||||| ||  | || || ||||| || || || || | ||||||||| |||||||| || |||||||| |||||||| |||||||||||||| || || ||||
gtaatacttgtgctctgagaaaatgatattgactgttgtttttggtgatatgaatacattattcgtcaaagtaggcaccttatttagtatttagactatcat-ttgcagcataaaaaacttttctt--tatctccatactcattttactcaagtgaggcaggacggtttggctaatgtatgtttccaaaatgtgttgcagTCACGTTTTGACATCTTGAAGATTCACTCGAGGAAAATGAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGCGCTTCAGGTG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv09s0002g05800.t01 (Vitis vinifera), 3'ss of exon 7
gtttgcatttttgctttcatgctacttattaatatatttgtactgggagaaaaagatgcacctggtgcattcctaaaaaagtattcctgaaaatggctatttatttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTG
       || | | ||| | | ||  |  |   |  ||      |  |       ||    ||||          |  ||  |||  |         | || | |||  ||||||||   ||||||||| ||||| || || || | ||||||||| |||||||| || ||||||||||||||||| |||||||||||||| ||||||||||
------gttatggtttttaggatatgtgatttgactttctggtagctatgttgctatctgactggcattgcatatattaaagatttttat------tttttgaattactcagTCTCGCTGGGATATTTTAAAAATACACTCGAGGAAAATGAATTTGATGCGTGGGATCGATCTGAAGAAGATTGCAGAGAAGATGAATGGTGCATCTGGTG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0008g04690.t01 (Vitis vinifera), 3'ss of exon 7
gtttgcatttttgctttcatgctacttattaatatatttgtactgggagaaaaagatgcacctggtgcattcctaaaaaagtattcctgaaaatggctatttatttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTG
      | || || ||  |   |   |||| ||     | |  |  |  |      |  | |   ||||    | ||  |  || |       |   | | | ||| | ||||| ||  | ||||||||||||||||| ||||||| |||||| ||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||
------agttatgattataaattcgatattcat-----tctgatatggcatttttttttatcaactgcaaaggtgaagca-catgctgatttttttttttcttttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGTGGGATTGATCTGAAGAAGATAGCAGAGAAGATGAATGGTGCATCTGGTG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S245_17V6.1 (Physcomitrella patens), 3'ss of exon 7
---------------gtttgcatttttgctttcatgctacttattaatatatttgtactgggagaaaaagatgcacctggtgcattcctaaaaaagtattcctgaaaatggctatttatttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTG
                |||  | |||  | ||    ||         |    |    ||        |   |   | | |  | ||         |   |  |  | |||  |   |  ||| |||||||||  |||| ||  | ||||| |||||||| |  ||||| |||||||| || |||||| ||||||||||||| || ||||||   || |||||||| |
gtatacaaaggcgtgatttataatttgccatttcctctctcccaccttgctctctcgctcctttcttat--ttttcttcgccccttgtcttgtgtgagctaatctatatgattgccttgttacgcagTCTCGATTGGACATCCTTAAAATTCATTCAAGGAAGATGAACTTAATGCGAGGTATTGATTTGAAGAAGATTGCTGAAAAGATGGGAGGCGCATCTGGAG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ04162 (Selaginella moellendorffii), 3'ss of exon 5
gtttgcatttttgctttcatgctacttattaatatatttgtactgggagaaaaagatgcacctggtgcattcctaaaaaagtattcctgaaaatggctatttatttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTG
                                                      |     |||||| | ||  |         ||||| |          |  ||| | ||||| || ||||||||  | || ||||||||  | |  |||||| ||||||| || || || ||||||||||| |||||||||||||| || || || || |
------------------------------------------------------gtatttcctggtccttttttctgtt--ctttcctcacg-----cgctcgtttttccagTCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGGGGGATCGACCTGAAGAAGATCGCCGAGAAGATGAACGGTGCCTCGGGAG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ20576 (Selaginella moellendorffii), 3'ss of exon 6
gtttgcatttttgctttcatgctacttattaatatatttgtactgggagaaaaagatgcacctggtgcattcctaaaaaagtattcctgaaaatggctatttatttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTG
                                                      |     |||||| | ||  |       | ||||| |          |  ||| | ||||| || ||||||||  | || ||||||||  | |  |||||| ||||||| || || || ||||||||||| |||||||||||||| || || || || |
------------------------------------------------------gtatttcctggtcctttttttctgttct-ttcctcacg-----cgctcgtttttccagTCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGGGGGATCGACCTGAAGAAGATCGCCGAGAAGATGAACGGTGCCTCGGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254333838|gb|GR848756.1|GR848756
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|254325634|gb|GR838515.1|GR838515
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|151400412|gb|EV270226.1|EV270226
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|16346794|gb|BI972389.1|BI972389
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|16279574|gb|BI943506.1|BI943506
EST:     ACCTGGACGGATTGAACCGAAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: ACCTGGACGGATTGA-CCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|209705801|gb|BW661469.1|BW661469
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|9819982|gb|BE555495.1|BE555495
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|16282487|gb|BI945043.1|BI945043
EST:     GGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|254349062|gb|GR860334.1|GR860334
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|31306289|gb|CD391492.1|CD391492
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCTAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|15589667|gb|BI674283.1|BI674283
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|16282402|gb|BI944997.1|BI944997
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|13562459|gb|BG550679.1|BG550679
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|254333837|gb|GR848755.1|GR848755
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|15661720|gb|BI699091.1|BI699091
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|192298661|gb|FG990957.1|FG990957
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCTATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|37997552|gb|CF809141.1|CF809141
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|15589675|gb|BI674291.1|BI674291
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|193458163|gb|FK421600.1|FK421600
EST:     GAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|208095215|gb|GD895753.1|GD895753
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATTGTAATTTTAATG
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAAT-G-AATTT-AATG
EST: gi|151412070|gb|EV281882.1|EV281882
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAA
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAA
EST: gi|120534367|gb|EH262500.1|EH262500
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|208147800|gb|GD947595.1|GD947595
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|16996050|gb|BM085422.1|BM085422
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|120494201|gb|EH222368.1|EH222368
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|213604425|gb|DB978241.1|DB978241
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCAGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|18690675|gb|BM519523.1|BM519523
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
EST: gi|209706925|gb|BW661510.1|BW661510
EST:     GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG                         TCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT
genomic: GACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcattt ... atttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacctggtgcattcctaaaaaagtattcctgaaaatggctatttatttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTG
             tcctaaa  putative branch site (score: 2)
                                          tttattt  putative PPT
                                        tatttatttatgca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgcatttttgctttcatgctacttattaatatatttgtactgggagaaaaagatgcacctggtgcattcctaaaaaagtattcctgaaaatggctatttatttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA