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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacatgagtctatctttctatttagtttttaaaccctttagtaatgaattgagattttgtctggtttgtttgttctaatatatggtagcaaaatatgcagGATGGTGCTGCAGTCACTGGCCTTGTTATTGCTGGGGCATCATTGGTTGCAGTGAATGTTACTGGAAATGCCATTTATGATCCCATAGGTTCTATTGTAG

Basic information

species Glycine max
transcript GLYMA08G23740.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23740.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv09s0054g00220.t01 (Vitis vinifera), 3'ss of exon 7
---aacatgagtctatctttctatttagtttttaaaccctttagtaatgaattgagattttgtctggtttgtttgttctaatatatggtagcaaaatatgcagGATGGTGCTGCAGTCACTGGCCTTGTTATTGCTGGGGCATCATTGGTTGCAGTGAATGTTACTGGAAATGCCATTTATGATCCCATAGGTTCTATTGTAG
     || |    |   |||||  |   |    ||  | |||  ||    ||||    ||    || | | ||| |  ||| |||||     ||| || |||||||||||||||||| ||||| ||| ||||||| || |||||| | ||||| || |||   ||||||||| | |||||||| || |||||||| ||||| |
tttggcaagctagtggttttctgctctttaagcaattcattt--tatcttattgcttgttctgttgttgtctttctcttaacatatgactttaaa-taagcagGATGGTGCTGCAGTTACTGGTCTTATTATTGCAGGAGCATCACTAGTTGCTGTAAATACGACTGGAAATCCAATTTATGACCCAATAGGTTCAATTGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393656|gb|EV263531.1|EV263531
EST:     ACTATATTTGGCGAGGCCATGGTCCCACATCTGTTGCTGTGATGACAGAG                         -ATGGTGCTGCAGTCACTGGCCTTGTTATT
genomic: ACTATATTTGGCGAGGCCATGATCCCACATCTGTTGCTGTGATGACAGAGgtgacaactt ... aaatatgcagGATGGTGCTGCAGTCACTGGCCTTGTTATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattgagattttgtctggtttgtttgttctaatatatggtagcaaaatatgcagGATGGTGCTGCAGTCACTGGCCTTGTTATTGCTGGGGCATCATTGGTTGCAGTGAATGTTACTGGAAATGCCATTTATGATCCCATAGGTTCTATTGTAG
                           ttctaat  putative branch site (score: 2)
                       tttgttctaatatat  TA-rich tract