1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgtgcagaaacttctatagtaggaattcggatttgaaggaagtctgcttctgagttatcttactgtgttgactaatctattgtaattgatggactgcagGAAAAATTTGCATCGATGATTGCGGATGCAGGGTTCCAGAAAGTAGAGTATGAGAATCTAGTTGGGGGAGTGGTTGCTATCCATTCAGGGTTAAAAATCT
species | Glycine max |
transcript | GLYMA08G22890.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGCAATCCTATCAGTACTTAGTTGAGAGTATCCGGCGTTTCCCCTCACAG GAAAAATTTGCATCGATGATGGCGGATGCANGGTTCEST: gi|7458587|gb|AW666037.1|AW666037
genomic: GGCAATCCTATCAGTACTTAGTTGAGAGTATCCGGCGTTTCCCCTCACAGgttatcacac ... tggactgcagGAAAAATTTGCATCGATGATTGCGGATGCAGGGTTC
EST: GGCAATCCTATCAGTGCTTAGTTGAGAGTATCCGGCGTTTCCCCTCACAG GGAGAAATATG-ATCGATGATTGCGGATGCAGGGTTC
genomic: GGCAATCCTATCAGTACTTAGTTGAGAGTATCCGGCGTTTCCCCTCACAGgttatcacac ... tggactgcagGAA-AAATTTGCATCGATGATTGCGGATGCAGGGTTC
tgcttctgagttatcttactgtgttgactaatctattgtaattgatggactgcagGAAAAATTTGCATCGATGATTGCGGATGCAGGGTTCCAGAAAGTAGAGTATGAGAATCTAGTTGGGGGAGTGGTTGCTATCCATTCAGGGTTAAAAATCT
taatctattgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgcagaaacttctatagtaggaattcggatttgaaggaagtctgcttctgagttatcttactgtgttgactaatctattgtaattgatggactgcagGAAAAATTTGCATCGATGATTGCGGATGCAGGGTTCCAGAAAGTAGAGTATGAGAATCTAGTTGGGGGAGTGGTTGCTATCCATTCAGGGTTAAAAATCT
-tgtgcag
- - - - - - - - - - - - - - -ggatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgac