1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtatattcttccattcttcaatgtctttactcttttaaataatcactgtttttctccttggaacactttcagtttcttaattatgaatgaaaacatcttcgcagGGTGATCGCTGCGATCTGAATTTTGTTGTAGGATGCACAGATCCTAGTTCTCACCTATACAACCCGCTAGCCAATGTAGATGATGGAACGTGTACTATTG
species | Glycine max |
transcript | GLYMA08G22740.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATAAAGTTATAACCAAATGTGCTATGATTGGTAATTTGTCAAAAGAAGGG GGTGATCGCTGCGATCTGAATTTTGTTGTAGGATGCACAGATCCTAGTTCTEST: gi|209725499|gb|BW677796.1|BW677796
genomic: ATAAAGTTATAACCAAATGTGCTATGATTGGTAATTTGTCAAAAGAAGGGgtgagtatat ... atcttcgcagGGTGATCGCTGCGATCTGAATTTTGTTGTAGGATGCACAGATCCTAGTTCT
EST: ATAAAGTTATAACCAAATGTGCTATGATTGGTAATTTGTCAAAAGAAGGG GGTGATCGCTGCGATCTGAATTTTGTTGTAGGATGCACAGATCCTAGTTCTEST: gi|192314804|gb|FK006016.1|FK006016
genomic: ATAAAGTTATAACCAAATGTGCTATGATTGGTAATTTGTCAAAAGAAGGGgtgagtatat ... atcttcgcagGGTGATCGCTGCGATCTGAATTTTGTTGTAGGATGCACAGATCCTAGTTCT
EST: ATAAAGTTATAACCAAATGTGCTATGATTGGTAATTTGTCAAAAGAAGGG GGTGATCGCTGCGATCTGAATTTTGTTGTAGGATGCACAGATCCTAGTTCTEST: gi|17519754|gb|BM188796.1|BM188796
genomic: ATAAAGTTATAACCAAATGTGCTATGATTGGTAATTTGTCAAAAGAAGGGgtgagtatat ... atcttcgcagGGTGATCGCTGCGATCTGAATTTTGTTGTAGGATGCACAGATCCTAGTTCT
EST: ATAAAGTTATAACCAAATGTGCTATGATTGGTAATTTGTCAAAAGAAGGG GGTGATCGCTGCGATCTGAATTTTGTTGTAGGATGCACAGATCCTAGTTCTEST: gi|214007901|gb|DB987817.1|DB987817
genomic: ATAAAGTTATAACCAAATGTGCTATGATTGGTAATTTGTCAAAAGAAGGGgtgagtatat ... atcttcgcagGGTGATCGCTGCGATCTGAATTTTGTTGTAGGATGCACAGATCCTAGTTCT
EST: ATAAAGTTATAACCAAATGTGCTATGATTGGTAATTTGTCAAAAGAAGGG GGTGATCGCTGCGATCTGAATTTTGTTGTAGGATGCACAGATCCTAGTTCTEST: gi|213596677|gb|DB977993.1|DB977993
genomic: ATAAAGTTATAACCAAATGTGCTATGATTGGTAATTTGTCAAAAGAAGGGgtgagtatat ... atcttcgcagGGTGATCGCTGCGATCTGAATTTTGTTGTAGGATGCACAGATCCTAGTTCT
EST: ATAAAGTTATAACCAAATGTGCTATGATTGGTAATTTGTCAAAAGAAGGG GGTGATCGCTGCGATCTGAATTTTGTTGTAGGATGCACAGATCCTAGTTCT
genomic: ATAAAGTTATAACCAAATGTGCTATGATTGGTAATTTGTCAAAAGAAGGGgtgagtatat ... atcttcgcagGGTGATCGCTGCGATCTGAATTTTGTTGTAGGATGCACAGATCCTAGTTCT
ttttctccttggaacactttcagtttcttaattatgaatgaaaacatcttcgcagGGTGATCGCTGCGATCTGAATTTTGTTGTAGGATGCACAGATCCTAGTTCTCACCTATACAACCCGCTAGCCAATGTAGATGATGGAACGTGTACTATTG
tcttaat putative branch site (score: 3)
catcttc putative PPT
tttcttaattatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatattcttccattcttcaatgtctttactcttttaaataatcactgtttttctccttggaacactttcagtttcttaattatgaatgaaaacatcttcgcagGGTGATCGCTGCGATCTGAATTTTGTTGTAGGATGCACAGATCCTAGTTCTCACCTATACAACCCGCTAGCCAATGTAGATGATGGAACGTGTACTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA