Sequence
atgc intronic sequence ATGC exonic sequencegtacgtatctatacatcttgaatgtatcttttttttatttgagaggtgtgcttataaattaaacatgattaaacatgcacgtactgctatggtttacgtttactattcaaatgatgatctctttaagcgcacataaatcatagttgtttgaagccaacctccaaaattcatttttgtagGTGATGATGTAGTCCTCTACAAATACGGAGAGAAATCAGCTCAATCCTTAAGTTCAGCAGGGTTTCGATACATTACATTCAAATCCTATGATGG
Basic information
species | Glycine max |
transcript | GLYMA08G22420.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G22420.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv09s0002g06010.t01 (Vitis vinifera), 3'ss of exon 8
gtacgtatctatacatcttgaatgtatcttttttttatttgagaggtgtgcttataaattaaacatgattaaacatgcacgtactgctatggtttacgtttactattcaaatgatgatctctttaagcgcacataaatcatagttgtttgaagccaacctccaaaattcatttttgtagGTGATGATGTAGTCCTCTACAAATACGGAGAGAAATCAGCTCAATCCTTAAGTTCAGCAGGGTTTCGATACATTACATTCAAATCCTATGATGG
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---------------------------------------------------------------------gggtcttcctaaaatttttggagaacaagattgtcatttgtacaactatatatcc-------tgttagtctaagcattcttactctttccttcaa---tctaccttgcagATGATGATGTAGTGGCCTATAATTATGGAGAGAGATCCGCCCACTGCTTAAGTTCTGCTGGATTTCGATATCTTACATTCAAAGCCTATGATGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22932431|gb|BU549570.1|BU549570EST: AGCAAGAAGGCGAGCTGCTTCGTTACCTGTTTTGCTGAGCCATGGAATCA GTGATGATGTAGTCCTCTACAAATACGGAGAGAAATCAGCTCAATCCTTAA
genomic: AGCAAGAAGGCGAGCTGCTTCGTTACCTGTTTTGCTGAGCCATGGAATCAgtacgtatct ... atttttgtagGTGATGATGTAGTCCTCTACAAATACGGAGAGAAATCAGCTCAATCCTTAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagcgcacataaatcatagttgtttgaagccaacctccaaaattcatttttgtagGTGATGATGTAGTCCTCTACAAATACGGAGAGAAATCAGCTCAATCCTTAAGTTCAGCAGGGTTTCGATACATTACATTCAAATCCTATGATGG
ttcattttt CT-rich tract
aaaattcatttttgta TA-rich tract