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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgcatgtcaattttctttcccttgtttcttggaatggttgtgaataaatctgaaaccatttttctttctatgtgtttgtagGTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAGCAGCAGAGCTCACTTCCAAAATATGCCAACCCTGTACTCTTGTCAGCTG

Basic information

species Glycine max
transcript GLYMA08G22100.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18038919|gb|BM307213.1|BM307213
EST:     TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAG                         GTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG
genomic: TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcat ... gtgtttgtagGTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG
EST: gi|58023875|gb|CX710616.1|CX710616
EST:     TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAG                         GTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG
genomic: TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcat ... gtgtttgtagGTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG
EST: gi|21888224|gb|BQ741428.1|BQ741428
EST:     TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAG                         GTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG
genomic: TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcat ... gtgtttgtagGTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG
EST: gi|151409143|gb|EV278951.1|EV278951
EST:     TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACAAGAAACAGAAG                         GTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG
genomic: TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcat ... gtgtttgtagGTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG
EST: gi|51335761|gb|CO979627.1|CO979627
EST:     TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAG                         GTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG
genomic: TGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcat ... gtgtttgtagGTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttggaatggttgtgaataaatctgaaaccatttttctttctatgtgtttgtagGTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAGCAGCAGAGCTCACTTCCAAAATATGCCAACCCTGTACTCTTGTCAGCTG
                                tttttctttctatgt  CT-rich tract
                               atttttctttctat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattgcatgtcaattttctttcccttgtttcttggaatggttgtgaataaatctgaaaccatttttctttctatgtgtttgtagGTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAGCAGCAGAGCTCACTTCCAAAATATGCCAACCCTGTACTCTTGTCAGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG