Sequence
atgc intronic sequence ATGC exonic sequencegtgaccgtatctttaagtttctcaccgactaatgtctgcaaatactattgcatctaattaatcaaactttaatgcttttttacagGTTCATATGCTAGATATGGAGTGTTTTTCGTATTTGAATCGTGCTTTAGAGAGCTCCCTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCA
Basic information
species | Glycine max |
transcript | GLYMA08G21830.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G21830.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G22330.1 (Arabidopsis thaliana), 3'ss of exon 7
------------gtgaccgtatctttaagtttctcaccgactaatgtctgcaaatactattgcatctaattaatcaaactttaatgcttttttacagGTTCATATGCTAGATATGGAGTGTTTTTCGTATTTGAATCGTGCTTTAGAGAGCTCCCTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCA
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gtattttcccaaataaagttttttttcattccactattgatcttgctcaggactcaggagca-gtaagaatacctttgtttaattataaaacctcagGTTCATATGCTTGATATGGAGTGCTTCTCATACTTGAACCGTGCTCTTGAGAGCTCATTATCTCCGATAGTGATATTTGCAACAAATAGAGGTGTTTGCA
upper sequence: GLYMA08G21830.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0004g02910.t01 (Vitis vinifera), 3'ss of exon 7
gtgaccgtatctttaagtttctcaccgact----aatgtctgcaaat-actattgcatctaattaatcaaactttaatgcttttttacagGTTCATATGCTAGATATGGAGTGTTTTTCGTATTTGAATCGTGCTTTAGAGAGCTCCCTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCA
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gtctttttctcatttaatcccttttcatctttggattatctccaaattgcttttgtgtatcttggatt---tctgaacttattttcatagGTACACATGCTGGATATGGAGTGTTTTTCATATTTGAATCGTGCTCTAGAGAGCTCACTGTCTCCAATAGTAATTTTCGCTACAAATAGGGGAATATGTA
upper sequence: GLYMA08G21830.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S4_73V6.1 (Physcomitrella patens), 3'ss of exon 8
-------------gtgaccgtatctttaagtttctcaccgactaatgtctgcaaat--actattgcatctaattaatcaaactttaatgcttttttacagGTTCATATGCTAGATATGGAGTGTTTTTCGTATTTGAATCGTGCTTTAGAGAGCTCCCTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCA
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ttgatttatttcaagaagtgcctgcttcgttggccatttgtatgttctcctcaaactaacggctggaaaaatactgacgtggatttatggcgtactgcagGTGCATATGCTAGACATGGAATGTTTCACGTATTTGAATCGTGCTCTCGAAAGTTCATTGGCACCCATTGTCGTATTTGCCACTAATCGAGGCATTTGCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22930082|gb|BU547221.1|BU547221EST: TTGATGAAGGTGTAGCAGAGCTTGTNCCTNGAGTTCTATTCATTGATGAG GTTCATATGCTAGATATGGAGTGTTTTTCGTANNNGAATCGTGCTTTAGAG
genomic: TTGATGAAGGTGTAGCAGAGCTTGTTCCTGGAGTTCTATTCATTGATGAGgtgaccgtat ... ttttttacagGTTCATATGCTAGATATGGAGTGTTTTTCGTATTTGAATCGTGCTTTAGAG
EST:
gi|151406331|gb|EV276146.1|EV276146EST: TTGATGAAGGTGTAGCAGAGCTTGTTCCTGGAGTTCTATTCATTGATGAG GTTCATATGCTAGATATGGAGTGTTTTTCGTATTTGAATCGTGCTTTAGAG
genomic: TTGATGAAGGTGTAGCAGAGCTTGTTCCTGGAGTTCTATTCATTGATGAGgtgaccgtat ... ttttttacagGTTCATATGCTAGATATGGAGTGTTTTTCGTATTTGAATCGTGCTTTAGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatgtctgcaaatactattgcatctaattaatcaaactttaatgcttttttacagGTTCATATGCTAGATATGGAGTGTTTTTCGTATTTGAATCGTGCTTTAGAGAGCTCCCTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCA
tgctttttt CT-rich tract
taattaatcaaacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgaccgtatctttaagtttctcaccgactaatgtctgcaaatactattgcatctaattaatcaaactttaatgcttttttacagGTTCATATGCTAGATATGGAGTGTTTTTCGTATTTGAATCGTGCTTTAGAGAGCTCCCTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA