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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatttagttgtcaactgattttttattaattatatttcgtattttggcagtactcaatttactcacttcctttgctattttgggcttacagCTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCTGATGTTTTCAG

Basic information

species Glycine max
transcript GLYMA08G21570.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S251_2V6.1 (Physcomitrella patens), 3'ss of exon 5
---gtatgatttagttgtcaactgattt--tttattaattatat-ttcgtattttggcagtactcaatttactcacttcctttgctattttgggcttacagCTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCTGATGTTTTCAG
   |      |    ||  || ||  |   |||||||    ||  | | |      |    | |  ||      | |    |   | |  |     | ||||||||   ||||||||| ||||||| ||   |||||| ||||||||||||||||||||||| ||| |
gaagagcatctggactgagaattggatgagtttattaccgctacgtccatgcacaagtca-atttcataccaagattaatgtctttctcctatatatgcagCTACTCGATGGAGGGATGGTACAACCGGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCCG

upper sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S489_24V6.1 (Physcomitrella patens), 3'ss of exon 6
---gtatgatttagttgtcaactgattt--tttattaattatat-ttcgtattttggcagtactcaatttactcacttcctttgctattttgggcttacagCTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCTGATGTTTTCAG
   |      |    ||  || ||| |   |||||||    ||  | | |      |      |||    |   | |  | |   | |        | ||||||||   ||||||||| ||||||  ||   |||||| ||||||||||||||||||||||| ||| |
gaagagcatctggactgagaattgaatgagtttattaccgctacgtccatgcacaagtcaatttcacaccaag-attaacgtctttctcccatatatgcagCTACTCGATGGAGGGATGGTACAATCGGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCTG

upper sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S176_7V6.1 (Physcomitrella patens), 3'ss of exon 6
---gtatgatttagttgtcaactgattt--tttattaattatat-ttcgtattttggcagtactcaatttactcacttcctttgctattttgggcttacagCTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCTGATGTTTTCAG
   |      |    ||  || ||  |   |||||||    ||  | | |      |      |||    |   | |  | |   | |        | ||||||||   ||||||||| ||||||| ||   |||||| ||||||||||||||||||||||| ||  |
gaagagcatctggactgagaattggatgagtttattaccgctacgtccatgcacaagtcaatttcacaccaag-attaacgtctttctcccatatatgcagCTACTCGATGGAGGGATGGTACAACCGGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTTCG

upper sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S496_15V6.1 (Physcomitrella patens), 3'ss of exon 3
---gtatgatttagttgtcaactgattt--tttattaattatat-ttcgtattttggcagtactcaatttactcacttcctttgctattttgggcttacagCTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCTGATGTTTTCAG
   |      |    ||  || ||  |   |||||||    ||  | | |      |      |||    |   | |  | |   | | |      | ||||||||   ||||||||| ||||||  ||   |||||| ||||||||||||||||||||||| ||| |
gaagagcatctggactgagaattggatgagtttattaccgctacgtccatgcacaagtcaatttcacaccaag-attaacgtctttctctcatatatgcagCTACTCGATGGAGGGATGGTACAATCGGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCCG

upper sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 7
-------gtatgatttagttgtcaactgattttttattaattatatttcgtattttggcagtactcaatttactcacttcctttgctattttgggcttacagCTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCTGATGTTTTCAG
        | ||   ||    | |  ||| ||| |    | ||  || | ||     |      |||   ||   | |  | |   | |        |  |||||||   ||||||||| ||||||| ||   |||||| ||||||||||||||||||||||| ||| |
gaagtgcatttggactaagaattagatgagtttattaccactacgtt-catacacaagtcaatttcacactaag-attaacgtctttctcccatatgtgaagCTACTCGATGGAGGGATGGTACAACCGGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCCG

upper sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S117_225V6.1 (Physcomitrella patens), 3'ss of exon 5
---gtatgatttagttgtcaactgattt--tttattaattatat-ttcgtattttggcagtactcaatttactcacttcctttgctattttgggcttacagCTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCTGATGTTTTCAG---------------------------------
   |      |    ||  || ||  |   |||||||    ||  | | |      |      |||    |   | |  | |   | |        | |||||| |   ||||||||| ||||||  ||   |||||| ||||||||||||||||||||||| ||| |                                 
gaagagcatctggactgagaattggatgagtttattaccgctacgtccatgcacaagtcaatttcacaccaag-attaacgtctttctcccatatatgcagCTATTCGATGGAGGGATGGTACAATCGGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCCGGAGAGGCTCTCCCCCCCTCCCTCCTCCCTTGTC

upper sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S613_17V6.1 (Physcomitrella patens), 3'ss of exon 5
---gtatgatttagttgtcaactgattt--tttattaattatat-ttcgtattttggcagtactcaatttactcacttcctttgctattttgggcttacagCTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCTGATGTTTTCAG
   | |    |    ||  || ||  |   |||||||    ||  | | |      |      |||    |   | |  | |   | |  |     | ||||||||   ||||||||| ||| ||  ||   |||||| ||||||||||||||||||||||| ||| |
gaagaacatctggactgagaattggatgagtttattaccgctacgtccatgcacaagtcaatttcacaccaag-attaacgtctttctcctatatatgcagCTACTCGATGGAGGGATGGTATAATCGGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCCG

upper sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S360_49V6.1 (Physcomitrella patens), 3'ss of exon 7
---gtatgatttagttgtcaactgattt--tttattaattatat-ttcgtattttggcagtactcaatttactcacttcctttgctattttgggcttacagCTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCTGATGTTTTCAG
   |      |    ||  || ||  |   |||||||    ||  | | |      |      |||    |   | |  | |   | |        | ||||||||   ||||||||| ||||||| ||   |||||| ||||||||||||||||||||||| ||| |
gaagagcatctggactgagaattggatgagtttattaccgctacgtccatgcacaagtcaatttcacaccaag-attaacgtctttctcccatatatgcagCTACTCGATGGAGGGATGGTACAACCGGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCCG

upper sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S1655_2V6.1 (Physcomitrella patens), 3'ss of exon 2
---gtatgatttagttgtcaactgattt--tttattaattatat-ttcgtattttggcagtactcaatttactcacttcctttgctattttgggcttacagCTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCTGATGTTTTCAG
   |      |    ||  || ||  |   ||||||| |  ||  | | |      |      |||    |   | |  | |   | |        | ||||||||   ||||||||| ||||||| ||   |||||| |||||||||||||||| |||||| ||| |
gaagagcatctggactgagaattggatgagtttattactgctacgtccatgcacaagtcaatttcacaccaag-attaacgtctttctcccatatatgcagCTACTCGATGGAGGGATGGTACAACCGGTCAGCATGTAGAATATGACCAAAGGCTTGATGTGTTCCG

upper sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S208_44V6.1 (Physcomitrella patens), 3'ss of exon 5
-------gtatgatttagttgtcaactgattttttattaattatatttcgtattttggcagtactcaatttactcacttcctttgctattttgggcttacagCTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCTGATGTTTTCAG
        | ||   |     | |  ||| |||||    | ||  |  | |      |      |||    |   | |  | |   | || |     | ||||||||   ||||||||| |||||||  |   |||||| ||||||||||||||||||||||| ||| |
gaagagcatttggactgaaaattagatgagttttttaccactacgtc-catgcacaagtcaatttcacaccaag-attaacgtcttttttctatatatgcagCTACTCGATGGAGGGATGGTACAACCAGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCTG

upper sequence: GLYMA08G21570.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S210_32V6.1 (Physcomitrella patens), 3'ss of exon 5
---gtatgatttagttgtcaactgattt--tttattaattatat-ttcgtattttggcagtactcaatttactcacttcctttgctattttgggcttacagCTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCTGATGTTTTCAG
   |  |   |    |   || ||| |   ||||||| |  ||| | | |||    |    | |  || |    | |    |   | ||       |||||||||| | |||||||||  |||||| ||   |||||| ||||||||||||||||||||||| |||  
gaagagtatctagactaagaattgaatgaatttattactgctatgtccatatacaagtca-attttatatcaagattaatatctttcttccatatatacagCTACTCAATGGAGGGATGATACAACCGGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtattttggcagtactcaatttactcacttcctttgctattttgggcttacagCTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCTGATGTTTTCAG
                       tactcac  putative branch site (score: 1)
                 tcaattta  TA-rich tract