1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcatgttgcacaagtgatggttatggaactctacatttgttgtggatacttgctaggttatggaaattggatattttgatgcaaaaattgtgttccacagGCATCTGAAAATCTTGGTATGGCTATGATCTACACACTTGTTACCTCAGCTAAAGAGTGGTTGGCTGACCGGTTTTGTCAAGATGATGTTGGGAGTACTG
species | Glycine max |
transcript | GLYMA08G20940.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAATGTCTACTGAAGATCTAAGGATTTTGAAAGAAAATCTTCAACAAGAG GCATCTGAAAATCTTGGTATGGCTATGATCTACACACTTGTTACCTCAGCTEST: gi|151399149|gb|EV269020.1|EV269020
genomic: GAATGTCTACTGAAGATCTAAGGATTTTGAAAGAAAATCTTCAACAAGAGgtagtctttt ... tgttccacagGCATCTGAAAATCTTGGTATGGCTATGATCTACACACTTGTTACCTCAGCT
EST: GAATGTCTACTGAAGATCTAAGGATTTTGAAAGAAAATCTTCAACAAGAG GCATCTGAAAATCTTGGTATGGCTATGATCTACACACTTGTTACCTCAGCTEST: gi|193653142|gb|FK599028.1|FK599028
genomic: GAATGTCTACTGAAGATCTAAGGATTTTGAAAGAAAATCTTCAACAAGAGgtagtctttt ... tgttccacagGCATCTGAAAATCTTGGTATGGCTATGATCTACACACTTGTTACCTCAGCT
EST: GAACGTCTACTGAAGATCTAAGGATTTTGAAAGAAAATCTTCAACAAGAG GCATCTGAAAATCTTGGTATGGEST: gi|193509174|gb|FK465658.1|FK465658
genomic: GAATGTCTACTGAAGATCTAAGGATTTTGAAAGAAAATCTTCAACAAGAGgtagtctttt ... tgttccacagGCATCTGAAAATCTTGGTATGG
EST: GAACGTCTACTGAAGATCTAAGGATTTTGAAAGAAAATCTTCAACAAGAG GCATCTGAAAATCTTGGTATGGEST: gi|193545440|gb|FK499537.1|FK499537
genomic: GAATGTCTACTGAAGATCTAAGGATTTTGAAAGAAAATCTTCAACAAGAGgtagtctttt ... tgttccacagGCATCTGAAAATCTTGGTATGG
EST: GAACGTCTACTGAAGATCTAAGGATTTTGAAAGAAAATCTTCAACAAGAG GCATCTGAAAATCTTGGTATGGEST: gi|151410528|gb|EV280343.1|EV280343
genomic: GAATGTCTACTGAAGATCTAAGGATTTTGAAAGAAAATCTTCAACAAGAGgtagtctttt ... tgttccacagGCATCTGAAAATCTTGGTATGG
EST: GAATGTCTACTGAAGATCTAAGGATTTTGAAAGAAAATCTTCAACAAGAG GCATCTGAAAATCTTGGTATGGCTATGATCTACACACTTGTTACCTCAGCTEST: gi|193721797|gb|FK658281.1|FK658281
genomic: GAATGTCTACTGAAGATCTAAGGATTTTGAAAGAAAATCTTCAACAAGAGgtagtctttt ... tgttccacagGCATCTGAAAATCTTGGTATGGCTATGATCTACACACTTGTTACCTCAGCT
EST: AATGTCTACTGAAGATCTAAGGATTTTGAAAAGAAAATCTTCAACAAGAG GCATCTGAAAATCTTGGTATGGCTATGATCTACACACTTGTTACCTCAGCTEST: gi|151408650|gb|EV278458.1|EV278458
genomic: AATGTCTACTGAAGATCTAAGGATTTTGAAA-GAAAATCTTCAACAAGAGgtagtctttt ... tgttccacagGCATCTGAAAATCTTGGTATGGCTATGATCTACACACTTGTTACCTCAGCT
EST: GAATGTCTACTGAAGATCTAAGGATTTTGAAAGAAAATCTTCAACAAGAG GCATCTGAAAATCTTGGTATGGCTATGATCTACACACTTGTTACCTCAGCT
genomic: GAATGTCTACTGAAGATCTAAGGATTTTGAAAGAAAATCTTCAACAAGAGgtagtctttt ... tgttccacagGCATCTGAAAATCTTGGTATGGCTATGATCTACACACTTGTTACCTCAGCT
atacttgctaggttatggaaattggatattttgatgcaaaaattgtgttccacagGCATCTGAAAATCTTGGTATGGCTATGATCTACACACTTGTTACCTCAGCTAAAGAGTGGTTGGCTGACCGGTTTTGTCAAGATGATGTTGGGAGTACTG
ttttgat putative branch site (score: 4)
aaattggatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgttgcacaagtgatggttatggaactctacatttgttgtggatacttgctaggttatggaaattggatattttgatgcaaaaattgtgttccacagGCATCTGAAAATCTTGGTATGGCTATGATCTACACACTTGTTACCTCAGCTAAAGAGTGGTTGGCTGACCGGTTTTGTCAAGATGATGTTGGGAGTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - tgcacaa
- - - - - - -gtgatgg
- - - - - - - - - ggttatg
- - - - - - - - - - - - - - ctctaca
- - - - - - - - - - - - - - - - - - - gttgtgg
- - - - - - - - - - - - - - - - - - - - - - - tacttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgca