1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaagttgcatcattgtccttcaatattgtttcttcattttattactttcaattggaatagacacttctttgtgtcttatggccatttttttctacattgatttcagATTAGATATCGTCCCAATGCTCCATTGGTGCTTAAGGGCATCACTTGTACTTTTAAAGAAGGTAGTAGAGTGGGAGTCGTAGGAAGGACTGGAAGTGGAA
species | Glycine max |
transcript | GLYMA08G20770.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCCATCTTCATGGCCTTCAAAAGGCAGGATTGATCTTCAAGCCTTAGAG ATTAGATATCGTCCCAATGCTCCATTGGTGCTTAAGGGCATCACTTGTACTEST: gi|151402790|gb|EV272603.1|EV272603
genomic: CTCCATCTTCATGGCCTTCAAAAGGCAGGATTGATCTTCAAGCCTTAGAGgtaaagttgc ... ttgatttcagATTAGATATCGTCCCAATGCTCCATTGGTGCTTAAGGGCATCACTTGTACT
EST: CTCCATCTTCATGGCCTTCAAAAGGCAGGATTGATCTTCAAGCCTTAGAG ATTAGATATCGTCCCAATGCTCCATTGGTGCTTAAGGGCATCACTTGTACTEST: gi|21675866|gb|BQ628217.1|BQ628217
genomic: CTCCATCTTCATGGCCTTCAAAAGGCAGGATTGATCTTCAAGCCTTAGAGgtaaagttgc ... ttgatttcagATTAGATATCGTCCCAATGCTCCATTGGTGCTTAAGGGCATCACTTGTACT
EST: CTCCATCTTCATGGCCTTCAAAAGGCAGGATTGATCTTCAAGCCTTAGAG ATTAGATATCGTCCCAATGCTCCATTGGTGCTTAAGGGCATCACTTGTACT
genomic: CTCCATCTTCATGGCCTTCAAAAGGCAGGATTGATCTTCAAGCCTTAGAGgtaaagttgc ... ttgatttcagATTAGATATCGTCCCAATGCTCCATTGGTGCTTAAGGGCATCACTTGTACT
ttggaatagacacttctttgtgtcttatggccatttttttctacattgatttcagATTAGATATCGTCCCAATGCTCCATTGGTGCTTAAGGGCATCACTTGTACTTTTAAAGAAGGTAGTAGAGTGGGAGTCGTAGGAAGGACTGGAAGTGGAA
cattgat putative branch site (score: 4)
tttttttctacatt CT-rich tract
atttttttctacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagttgcatcattgtccttcaatattgtttcttcattttattactttcaattggaatagacacttctttgtgtcttatggccatttttttctacattgatttcagATTAGATATCGTCCCAATGCTCCATTGGTGCTTAAGGGCATCACTTGTACTTTTAAAGAAGGTAGTAGAGTGGGAGTCGTAGGAAGGACTGGAAGTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA