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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataataataaatttgtagcttgtatttggtgccttgttatttcttaggtttctgtatgaacgaaaatgataaatgctagaggttttgcctgacggctcattgcctgtgttactcttttaaatttgtagGTTTACTGAGTTTGGAGGTGCAGTTCCTCACAGACCTGCTGAGGACTTGGCATTTTCAATTGCAAGGTTTATACAGAAAGGGGGATCATTTGTCAATTAT

Basic information

species Glycine max
transcript GLYMA08G20650.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208118791|gb|GD918712.1|GD918712
EST:     CAAACCAAAGATGTGGACAGAGGCTTGGACTGGCTG                         GTTTACTGAGTTTGGAGGTGCAGTTCCTCACAGACCTGCTGAGGACTTGGC
genomic: CAAACCAAAGATGTGGACAGAGGCTTGGACTGGCTGgtataataat ... aaatttgtagGTTTACTGAGTTTGGAGGTGCAGTTCCTCACAGACCTGCTGAGGACTTGGC
EST: gi|193489666|gb|FK456779.1|FK456779
EST:     CCAAATAAGGCTTACAAACCAAAGATGTGGACAGAGGCTTGGACTGGCTG                         GTTTACTGAGTTCGGAGGTGCAGTTCCTCACAGACCTGCTGAGGACTTGGC
genomic: CCAAATAAGGCTTACAAACCAAAGATGTGGACAGAGGCTTGGACTGGCTGgtataataat ... aaatttgtagGTTTACTGAGTTTGGAGGTGCAGTTCCTCACAGACCTGCTGAGGACTTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctagaggttttgcctgacggctcattgcctgtgttactcttttaaatttgtagGTTTACTGAGTTTGGAGGTGCAGTTCCTCACAGACCTGCTGAGGACTTGGCATTTTCAATTGCAAGGTTTATACAGAAAGGGGGATCATTTGTCAATTAT
             gcctgac  putative branch site (score: 3)
                                      ctctttta  putative PPT
                                   ttactcttttaaattt  TA-rich tract