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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataactctccacttaaaacttgttataccactttcttaatcgatatgattagcttttctttaaagtttcagccttatccttgcaattaaaattagttgtaaaatgtctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGAAAGATGGACAAA

Basic information

species Glycine max
transcript GLYMA08G18750.3
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20498513|gb|BQ273443.1|BQ273443
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|120533762|gb|EH261895.1|EH261895
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|213596244|gb|DB960176.1|DB960176
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|209719071|gb|BW659374.1|BW659374
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|209703121|gb|BW664657.1|BW664657
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGC
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGC
EST: gi|20207665|gb|BQ133754.1|BQ133754
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAAGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|105634801|gb|DW247668.1|DW247668
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|120534301|gb|EH262434.1|EH262434
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|12688969|gb|BG155305.1|BG155305
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCCAGAACAG                         ATTCACACTGCCACCCTTTTTGACATTGGAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|13481886|gb|BG511229.1|BG511229
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|5606564|gb|AI900662.1|AI900662
EST:     GAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: GAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|23052894|gb|BU577385.1|BU577385
EST:     ACTGTTGATACCCCAAGACTAGGACGCANAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTG
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTG
EST: gi|120533257|gb|EH261390.1|EH261390
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|17153752|gb|BM143685.1|BM143685
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|209719072|gb|BW659375.1|BW659375
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|120534568|gb|EH262701.1|EH262701
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|120534652|gb|EH262785.1|EH262785
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|120529200|gb|EH257334.1|EH257334
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|9204621|gb|BE330845.1|BE330845
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|20449450|gb|BQ253574.1|BQ253574
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|23063750|gb|BU578617.1|BU578617
EST:     ACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|10233637|gb|BE802525.1|BE802525
EST:     ACTGTTGATACCCCAAGACTAGGACGCANAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTGTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|10236189|gb|BE805077.1|BE805077
EST:     GCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: GCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|209728198|gb|BW651633.1|BW651633
EST:     GCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAAC-TTGNAAGGATTGGACC
genomic: GCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTG-AAGGATTGGACC
EST: gi|7283676|gb|AW596280.1|AW596280
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|9440450|gb|BE440955.1|BE440955
EST:     TATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: TATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|120529512|gb|EH257646.1|EH257646
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
EST: gi|209725760|gb|BW659891.1|BW659891
EST:     ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAG                         ATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT
genomic: ACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGgtataactct ... tctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaagtttcagccttatccttgcaattaaaattagttgtaaaatgtctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGAAAGATGGACAAA
                       aattaaaattagttgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtataactctccacttaaaacttgttataccactttcttaatcgatatgattagcttttctttaaagtttcagccttatccttgcaattaaaattagttgtaaaatgtctattacagATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGAAAGATGGACAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA