1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gaaactgaagagaatttcaataataataataaggctgcatgcatgcatttccattctatgtttatgatgagaaggttttctttttctttttattttgcagGGGGAGTGCATTTCCTGCTGCTAGTATTGCCCAAGAGGAAAAATGTCTTTGGGACAGAAACAAGAGACTAGCTATCTGTGGAGACTTCTGTGTCAGTCCC
species | Glycine max |
transcript | GLYMA08G18500.4 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACATCTCAACCATTTTTCAAGAAAGCCCATAGATG GGGGAGTGCATTTCCTGCTGCTAGTATTGCCCAAGAGGAAAAATGTCTTTGEST: gi|15337551|gb|BI498207.1|BI498207
genomic: CACATCTCAACCATTTTTCAAGAAAGCCCATAGATGgtaagtaact ... tattttgcagGGGGAGTGCATTTCCTGCTGCTAGTATTGCCCAAGAGGAAAAATGTCTTTG
EST: AGCACGGGGCTTATCACATCTCAACCATTTTTCAAGAAAGCCCATAGATG GGGGAGTGCATTTCCTGCTGCTAGTATTGCCCAAGAGGAAAAATGTCTTTGEST: gi|7640560|gb|AW734922.1|AW734922
genomic: AGCACGGGGCTTATCACATCTCAACCATTTTTCAAGAAAGCCCATAGATGgtaagtaact ... tattttgcagGGGGAGTGCATTTCCTGCTGCTAGTATTGCCCAAGAGGAAAAATGTCTTTG
EST: AGCACGGGGCTTATCACATCTCAACCATTTTTCAAGAAAGCCCATAGATG GGGGAGTGCATTTCCTGCTGCTAGTATTGCCCAAGAGGAAAAATGTCTTTGEST: gi|19053511|gb|BM732178.1|BM732178
genomic: AGCACGGGGCTTATCACATCTCAACCATTTTTCAAGAAAGCCCATAGATGgtaagtaact ... tattttgcagGGGGAGTGCATTTCCTGCTGCTAGTATTGCCCAAGAGGAAAAATGTCTTTG
EST: AGCACGGGGCTTATCACATCTCAACCATTTTTCAAGAAAGCCCATAGATG GGGGAGTGCATTTCCTGCTGCTAGTATTGCCCAAGAGGAAAAATGTCTTTGEST: gi|16345122|gb|BI970717.1|BI970717
genomic: AGCACGGGGCTTATCACATCTCAACCATTTTTCAAGAAAGCCCATAGATGgtaagtaact ... tattttgcagGGGGAGTGCATTTCCTGCTGCTAGTATTGCCCAAGAGGAAAAATGTCTTTG
EST: AGCACGGGGCTTATCACATCTCAACCATTTTTCAAGAAAGCCCATAGATG GGGGAGTGCATTTCCTGCTGCTAGTATTGCCCAAGAGGAAAAATGTCTTTG
genomic: AGCACGGGGCTTATCACATCTCAACCATTTTTCAAGAAAGCCCATAGATGgtaagtaact ... tattttgcagGGGGAGTGCATTTCCTGCTGCTAGTATTGCCCAAGAGGAAAAATGTCTTTG
catttccattctatgtttatgatgagaaggttttctttttctttttattttgcagGGGGAGTGCATTTCCTGCTGCTAGTATTGCCCAAGAGGAAAAATGTCTTTGGGACAGAAACAAGAGACTAGCTATCTGTGGAGACTTCTGTGTCAGTCCC
ttttctttttcttttt CT-rich tract
ttttctttttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaactgaagagaatttcaataataataataaggctgcatgcatgcatttccattctatgtttatgatgagaaggttttctttttctttttattttgcagGGGGAGTGCATTTCCTGCTGCTAGTATTGCCCAAGAGGAAAAATGTCTTTGGGACAGAAACAAGAGACTAGCTATCTGTGGAGACTTCTGTGTCAGTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - gaagagaa
- - - - - - - - - - - - - - - -aggctgc
- - - - - - - - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - ccattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgag