1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatttatagtgttgcattgcattagtgtaacaaatatactgtaacttcagttttcattgttaacggggcggtaactggtatctccacagTGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGCTCAAACTGGACTCAAGAAGCCCTCAGACATTACACTCAACAAAGTGGCC
species | Glycine max |
transcript | GLYMA08G18500.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAAACGTTCTACTACAAG TGAAAGATGGGTTEST: gi|15337551|gb|BI498207.1|BI498207
genomic: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAGgtatttatag ... atctccacagTGAAAGATGGGTT
EST: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAG TGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGCEST: gi|8670006|gb|BE191113.1|BE191113
genomic: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAGgtatttatag ... atctccacagTGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
EST: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAG TGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGCEST: gi|19053511|gb|BM732178.1|BM732178
genomic: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAGgtatttatag ... atctccacagTGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
EST: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAG TGAAAGATGGGTTCTCCATTCTACAGCAGAATACGCAGAAGATATAATTGCEST: gi|7478474|gb|AW666280.1|AW666280
genomic: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAGgtatttatag ... atctccacagTGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
EST: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAG TGAAAGATGGGTTCTTCATTCTACAGCAGEST: gi|10231134|gb|BE800081.1|BE800081
genomic: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAGgtatttatag ... atctccacagTGAAAGATGGGTTCTTCATTCTACAGCAG
EST: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAG TGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGCEST: gi|7028660|gb|AW458443.1|AW458443
genomic: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAGgtatttatag ... atctccacagTGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
EST: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAG TGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGCEST: gi|8670000|gb|BE191107.1|BE191107
genomic: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAGgtatttatag ... atctccacagTGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
EST: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAG TGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGCEST: gi|16345122|gb|BI970717.1|BI970717
genomic: TTAAGCCAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTCTACTACAAGgtatttatag ... atctccacagTGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
EST: CAGGCTTATTGTGATAGCAGCAAGCCAAACCGTTNNNACTACAAG TGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
genomic: CAGGCTTATTGTGATAGCAGCAAGCCAAACCGTT-CTACTACAAGgtatttatag ... atctccacagTGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGC
tatactgtaacttcagttttcattgttaacggggcggtaactggtatctccacagTGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGCTCAAACTGGACTCAAGAAGCCCTCAGACATTACACTCAACAAAGTGGCC
tatctcc CT-rich tract
ttttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttatagtgttgcattgcattagtgtaacaaatatactgtaacttcagttttcattgttaacggggcggtaactggtatctccacagTGAAAGATGGGTTCTTCATTCTACAGCAGAATACGCAGAAGATATAATTGCTCAAACTGGACTCAAGAAGCCCTCAGACATTACACTCAACAAAGTGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC