Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggctttcaattgaacacacacacacacacgcacattaacaatttccttagtcaagtctactcagttatatataatctctgtagGCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCCACCTCCTCCCAGGCGCCG

Basic information

species Glycine max
transcript GLYMA08G18310.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20448248|gb|BQ252372.1|BQ252372
EST:     GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAG                         GCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC
genomic: GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAGgttggctttc ... atctctgtagGCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC
EST: gi|13252426|gb|BG363329.1|BG363329
EST:     GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAG                         GCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC
genomic: GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAGgttggctttc ... atctctgtagGCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC
EST: gi|14125941|gb|BG790379.1|BG790379
EST:     GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAG                         GCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC
genomic: GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAGgttggctttc ... atctctgtagGCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC
EST: gi|23063876|gb|BU578650.1|BU578650
EST:     GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAG                         GCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC
genomic: GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAGgttggctttc ... atctctgtagGCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC
EST: gi|192329329|gb|FK021811.1|FK021811
EST:     GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAG                         GCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC
genomic: GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAGgttggctttc ... atctctgtagGCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC
EST: gi|21256656|gb|BQ453544.1|BQ453544
EST:     GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAG                         GCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC
genomic: GGAAGAGGTCGTTCTCCATCTCCACCTAGACGCCTTAGATCCCCTGCAAGgttggctttc ... atctctgtagGCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcacattaacaatttccttagtcaagtctactcagttatatataatctctgtagGCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCCACCTCCTCCCAGGCGCCG
    cattaac  putative branch site (score: 2)
                                              tctctgt  putative PPT
                                tcagttatatataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttggctttcaattgaacacacacacacacacgcacattaacaatttccttagtcaagtctactcagttatatataatctctgtagGCTGTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGAAGACGTTCACCTCCACCTCCTCCCAGGCGCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC