Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaacttagtttgatatttatgtgtacacccaactacgtttactttccatttttactctatcttttttgaattctgacatttctgttttggtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAG

Basic information

species Glycine max
transcript GLYMA08G17810.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G17810.3 (Glycine max), 3'ss of exon 7
lower sequence: AT1G79210.3 (Arabidopsis thaliana), 3'ss of exon 7
-taaacttagtttgatat--ttatgtgtacacccaactacgtttactttccatttttactctatcttttttgaattctgacatttctgttttggtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAG
 |  | || |  ||| ||  |  |||  |  |  | ||   ||| |   | |   | |||  |||||  ||  | |||  |  |    || || |  |||||||||||||||||| |||||||| || || || || ||||||| |||||| || || |||||| | ||||| 
attgatttggcgtgagataatgttgttaatgcaaatctgtatttgcaaactagact-actgaatcttgcttctaatct--ctgtctccttctgctgttaatagTGGTGTTAGGCCGTTTGGAGTTTCTCTACTGGTGGCTGGGTATGATGACAAGGGTCCACAACTGTATCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15815476|gb|BI787751.1|BI787751
EST:     CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGG                         TGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
EST: gi|4305924|gb|AI443831.1|AI443831
EST:     AACTTGTCAAGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATTCTGG                         TG-TGTTAGGCC
genomic: AACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAAT-CTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCC
EST: gi|27425474|gb|CA936994.1|CA936994
EST:     CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGG                         TGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
EST: gi|6567102|gb|AW234729.1|AW234729
EST:     CAACTTGTCAAGGAAGTTGCCGCCGTAATGCANGAATNTACTCAATCTGG                         TGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
EST: gi|37996790|gb|CF808379.1|CF808379
EST:     CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGG                         TGGCGTTAGGCCTTTT
genomic: CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTT
EST: gi|27424967|gb|CA936487.1|CA936487
EST:     CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGG                         TGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
EST: gi|15285795|gb|BI469686.1|BI469686
EST:     CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGG                         TGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
EST: gi|207767049|gb|GD737011.1|GD737011
EST:     AACTTGTCNGGGAAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGG                         TGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTG
genomic: AACTTGTCAGGGAA-GTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTG
EST: gi|208333367|gb|GE126132.1|GE126132
EST:     CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGG                         TGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
EST: gi|13311848|gb|BG405499.1|BG405499
EST:     CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGG                         TGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
EST: gi|15000807|gb|BI321621.1|BI321621
EST:     CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGG                         TGGTGTTAGGCCTTTTG
genomic: CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTTG
EST: gi|207710725|gb|GD691717.1|GD691717
EST:     CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAACCTGG                         TGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGTTGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
EST: gi|7690855|gb|AW758992.1|AW758992
EST:     CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATNTACTCAATCTGG                         TGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
EST: gi|13563115|gb|BG551335.1|BG551335
EST:     CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGG                         TGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
EST: gi|208330695|gb|GE132640.1|GE132640
EST:     CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGG                         TGGTGTTAGGCCTTTTGGAGTGTCCCTGACTAGCTGCTGGGTTTGATGATA
genomic: CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTG-CTAGTTGCTGGGTTTGATGATA
EST: gi|298192268|gb|HO036350.1|HO036350
EST:     CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGG                         TGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
EST: gi|8283306|gb|BE020867.1|BE020867
EST:     CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGG                         TGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATGA
genomic: CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
EST: gi|27446035|gb|CA953158.1|CA953158
EST:     CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGG                         TGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
EST: gi|24135847|gb|BU926357.1|BU926357
EST:     CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGG                         TGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
EST: gi|17023069|gb|BM094103.1|BM094103
EST:     CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGG                         TGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCCGTAATGCAGGAATTTACTCAATCTGGgtaaatattt ... gtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccatttttactctatcttttttgaattctgacatttctgttttggtcctaatagTGGTGTTAGGCCTTTTGGAGTGTCCCTGCTAGTTGCTGGGTTTGATGATAACGGGCCACAATTATATCAG
                          ttctgac  putative branch site (score: 2)
             tatcttttttgaatt  TA-rich tract