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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcctcattaaataagtatccttaatggatatctttgtatattacatttcctttgccaatctccgattcttcactgttaacttaatctaacctttgtagGAGATTGCATGGACTGGCCGAATGCTTAAGGCCTACTACTCTGCTGGATGCATTCTTTGGATTTTTTGTGGTGCAGTGATCCTTCTTTTAACCACAAATA

Basic information

species Glycine max
transcript GLYMA08G16870.4
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16870.4 (Glycine max), 3'ss of exon 7
lower sequence: Vv13s0156g00080.t01 (Vitis vinifera), 3'ss of exon 11
gtttcctcattaaataagtatccttaatggatatctttgtatattacatttcctttgccaatctccgattcttcactgttaacttaatctaacctttgtagGAGATTGCATGGACTGGCCGAATGCTTAAGGCCTACTACTCTGCTGGATGCATTCTTTGGATTTTTTGTGGTGCAGTGATCCTTCTTTTAACCACAAATA
||| | |  ||||  ||      || ||  ||   |  | || ||| || || |||   | | |  |||  || |||  ||| |  ||  |  | ||||||||| |  ||||| | |||| |    | ||||||| ||| ||||||||| | |||||||||||  ||||||| |||| ||||||| || || ||| ||| |
gttcctt--ttaagaaa------ttgatccatgattcagaatgttatatatctttt-ttattttttgatatttaactactaaat--attca--cattgtagGAGTTCACATGGTCAGGCCAACGCTTGAAGGCCTTCTATTCTGCTGGAGGAATTCTTTGGATAATTTGTGGAGCAGGGATCCTTTTTCTACCCAGAAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337979|gb|CO981845.1|CO981845
EST:     TTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATAGCATTACAG                         GAGATTGCATGGACTGGCCGAATGCTTAAGGCCTACTACTCTGCTGGATGC
genomic: TTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATAGCATTACAGgtttcctcat ... acctttgtagGAGATTGCATGGACTGGCCGAATGCTTAAGGCCTACTACTCTGCTGGATGC
EST: gi|11274169|gb|BF324537.1|BF324537
EST:     TTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATAGCATTACAG                         GAGATTGCATGGACTGGCCGAATGCTTAAGGCCTACTACTCTGCTGGATGC
genomic: TTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATAGCATTACAGgtttcctcat ... acctttgtagGAGATTGCATGGACTGGCCGAATGCTTAAGGCCTACTACTCTGCTGGATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttcctttgccaatctccgattcttcactgttaacttaatctaacctttgtagGAGATTGCATGGACTGGCCGAATGCTTAAGGCCTACTACTCTGCTGGATGCATTCTTTGGATTTTTTGTGGTGCAGTGATCCTTCTTTTAACCACAAATA
                                        atctaac  putative branch site (score: 2)
                                              cctttgt  CT-rich tract
                                ttaacttaatctaa  TA-rich tract