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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaatagttttagaaaatcaaattgaattaattattttgaatattgcttacttaataatgcatatatataatccttgtacaaaggtgttttaatatctacactctgtttagattttgttgtataatctttgattcatacacttggtcacagATACCAAGCAAAGCACAAGTTGACTCATTATCCCAGGAATTGCGAAGTCGTGCAACTATCCCAG

Basic information

species Glycine max
transcript GLYMA08G16770.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213593279|gb|DB966104.1|DB966104
EST:     GTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCACAAGTTGACTCATTATCCCAGGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCACAAGTTGACTCATTATCCCAGGAATTGCGAAGTCGT
EST: gi|14206066|gb|BG839744.1|BG839744
EST:     GTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCACAAGTTGACTCATTATCCCAGGAAATTGCGAA
genomic: GTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCACAAGTTGACTCATTATCCCAGGAA-TTGCGAA
EST: gi|13562412|gb|BG550632.1|BG550632
EST:     GTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCACAAGTTGACTCATTATCCCAGGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCACAAGTTGACTCATTATCCCAGGAATTGCGAAGTCGT
EST: gi|209725513|gb|BW677810.1|BW677810
EST:     GTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCACAAGTTGACTCATTATCCCAGGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTGCCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCACAAGTTGACTCATTATCCCAGGAATTGCGAAGTCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacactctgtttagattttgttgtataatctttgattcatacacttggtcacagATACCAAGCAAAGCACAAGTTGACTCATTATCCCAGGAATTGCGAAGTCGTGCAACTATCCCAG
                              ctttgat  putative branch site (score: 5)
               attttgttgtataat  TA-rich tract