Sequence
atgc intronic sequence ATGC exonic sequencegtgtcaactttttctttttatgtaatttgcttcttgcgccaaaagatgccaccatttgactctgctaatggtctttttgattttggctgttacagAGGGATTATGAAGAATTTAAGGTGAGGATTAACAGTTTGGTGGCAACAGCACAAAAGGTTCCTGAGGATGGATGGACCATGCAAGATGGGACTCCTTGGC
Basic information
species | Glycine max |
transcript | GLYMA08G15380.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G15380.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G21770.1 (Arabidopsis thaliana), 3'ss of exon 6
--gtgtcaactttttctttttatgtaatttgcttcttgcgccaaaagatgccaccatttgactctgctaat--ggtctttttgattttg--gctgttacagAGGGATTATGAAGAATTTAAGGTGAGGATTAACAGTTTGGTGGCAACAGCACAAAAGGTTCCTGAGGATGGATGGACCATGCAAGATGGGACTCCTTGGC
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gtttgttgttttatccttacaaaaagaaaggatccatccg--gatttgaactaaagcctgattctttttgtccattttttttggtggtgctgttgttgcagAGAGACTATGAGGAATTCAAAGTAAAGATAAATGCATTGGTTTCTGTATCACAGAAAGTTCCTGAAGATGGTTGGACTATGCAAGATGGAACTCCTTGGC
upper sequence: GLYMA08G15380.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G64740.1 (Arabidopsis thaliana), 3'ss of exon 6
---------------------------------------------------------------------------------------gtgtcaactttttctttttatgtaatttgc-ttcttgcgccaaaagatgccaccatttgactctg--ctaatggtctttttgattt--tggctgttacagAGGGATTATGAAGAATTTAAGGTGAGGATTAACAGTTTGGTGGCAACAGCACAAAAGGTTCCTGAGGATGGATGGACCATGCAAGATGGGACTCCTTGGC
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gttactagttcttacttttttataaatttgatttgatgagaaaagttttggtctaattgattcttgctttagaaaaaaaaaattcatgagaaaagttatcaatcttttgttatatgggctcttatgaaagaagatggtggctttgaaaattgatttgaaagattgtgtgttttactggttttgacagAGAGATTATGAAGAATTCAAAGTAAAGATCAATGCTTTAGTAGCAACAGCACAGAAAGTGCCTGAGGATGGTTGGACTATGCAAGACGGTACACCTTGGC
upper sequence: GLYMA08G15380.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0031g02060.t01 (Vitis vinifera), 3'ss of exon 7
-------------------------------------gtgtcaactttttctttttatgtaatttgcttcttgcgccaaaagatgcca-----ccatttgactctgctaatggtctttttgattttggctgttacagAGGGATTATGAAGAATTTAAGGTGAGGATTAACAGTTTGGTGGCAACAGCACAAAAGGTTCCTGAGGATGGATGGACCATGCAAGATGGGACTCCTTGGC
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gtttgctactgtcccctatataaagacataaattctcattacagttgatctgtttcaatgaaggtgcaatttcctgtataataccttaagtttccatataaaggtaatgtttgattatattattttc-cgggttcagAGAGAGTATGAGGAGTTCAAAGTTCGAATAAATGGGTTAGTTTCCATGGCACAAAAGGTTCCTGAGGAAGGCTGGACAATGCAGGATGGAACTCCATGGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaagatgccaccatttgactctgctaatggtctttttgattttggctgttacagAGGGATTATGAAGAATTTAAGGTGAGGATTAACAGTTTGGTGGCAACAGCACAAAAGGTTCCTGAGGATGGATGGACCATGCAAGATGGGACTCCTTGGC
tttttgatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtcaactttttctttttatgtaatttgcttcttgcgccaaaagatgccaccatttgactctgctaatggtctttttgattttggctgttacagAGGGATTATGAAGAATTTAAGGTGAGGATTAACAGTTTGGTGGCAACAGCACAAAAGGTTCCTGAGGATGGATGGACCATGCAAGATGGGACTCCTTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG