1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagttacctctgatggtgatgtataattttattttgttttttgtttctcaacgaatgatttctctgttatgccagGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATCGTGGCGCAGGTTCCAGAGGTTCTTGGAATGGAGCAATTGATGGTGAAG
species | Glycine max |
transcript | GLYMA08G14290.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGACAGGTTTGGAGAGGCTGGGCTTAAAGGTTCTGCAATGGGGATGGGG GATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATEST: gi|16996897|gb|BM086269.1|BM086269
genomic: ATGACAGGTTTGGAGAGGCTGGGCTTAAAGGTTCTGCAATGGGGATGGGGgtaagttacc ... gttatgccagGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAAT
EST: ATGACAGGTTTGGAGAGGCTGGGCTTAAAGGTTCTGCAATGGGGATGGGG GATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATEST: gi|120532498|gb|EH260631.1|EH260631
genomic: ATGACAGGTTTGGAGAGGCTGGGCTTAAAGGTTCTGCAATGGGGATGGGGgtaagttacc ... gttatgccagGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAAT
EST: ATGACAGGTTTGGAGAGGCTGGGCTTAAAGGTTCTGCAATGGGGATGGGG GATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAAT
genomic: ATGACAGGTTTGGAGAGGCTGGGCTTAAAGGTTCTGCAATGGGGATGGGGgtaagttacc ... gttatgccagGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAAT
gtataattttattttgttttttgtttctcaacgaatgatttctctgttatgccagGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATCGTGGCGCAGGTTCCAGAGGTTCTTGGAATGGAGCAATTGATGGTGAAG
tttctctgtt CT-rich tract
attttattttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttacctctgatggtgatgtataattttattttgttttttgtttctcaacgaatgatttctctgttatgccagGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATCGTGGCGCAGGTTCCAGAGGTTCTTGGAATGGAGCAATTGATGGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA