1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...actgaagtatttatctattaccagcacacttctgatttgtgactgaaggattaataacttagcttctagttatgactcgaacttcttttttctggtgcagACAAATTTCTCTAGACTGCATGTTCTTGGAGTCTCAGCACATAATTGATTACAGCCTTCTGTTGGGATTACATTTTAGAGCTCCGGAGAATTTAAAGGCC
species | Glycine max |
transcript | GLYMA08G13450.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTAAAATATGAATTTCATATGGATAAAAAATTACGAGAATCCCTATTCAA ACAAATTTCTCTAGACTGCATGTTCTTGGAGTCTCAGCACATAATTGATTAEST: gi|51343270|gb|CO984003.1|CO984003
genomic: CTAAAATATGAATTTCATATGGATAAAAAATTACGAGAATCCCTATTCAAgtgagttcct ... tctggtgcagACAAATTTCTCTAGACTGCATGTTCTTGGAGTCTCAGCACATAATTGATTA
EST: CTAAAATATGAATTTCATATGGATAAAAAATTACGAGAATCCCTATTCAA ACAAATTTCTCTAGACTGCATGTTCTTGGAGTCTCAGCACATAATTGATTA
genomic: CTAAAATATGAATTTCATATGGATAAAAAATTACGAGAATCCCTATTCAAgtgagttcct ... tctggtgcagACAAATTTCTCTAGACTGCATGTTCTTGGAGTCTCAGCACATAATTGATTA
aaggattaataacttagcttctagttatgactcgaacttcttttttctggtgcagACAAATTTCTCTAGACTGCATGTTCTTGGAGTCTCAGCACATAATTGATTACAGCCTTCTGTTGGGATTACATTTTAGAGCTCCGGAGAATTTAAAGGCC
taataac putative branch site (score: 1)
cttcttttttctggt putative PPT
ttaataactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgaagtatttatctattaccagcacacttctgatttgtgactgaaggattaataacttagcttctagttatgactcgaacttcttttttctggtgcagACAAATTTCTCTAGACTGCATGTTCTTGGAGTCTCAGCACATAATTGATTACAGCCTTCTGTTGGGATTACATTTTAGAGCTCCGGAGAATTTAAAGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA