1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tctcctgtgccttcactactatgtttattgtacattagcatgtaatattcatcaattttctgaatgacatgtcttactgttggtgggataatgccttcagACTAGTGGAATTCGATCACACACTTTATCCATGCTTGTGAACGATGCTCCTGGAGTTCTAAACATTGTTACAGGAGTTTTTGCTAGAAGAGGCTATAACA
species | Glycine max |
transcript | GLYMA08G13290.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGTCAATCAAGTACTTGATGCTCACTGGGGTGTCCTCAATGAAGAAGAT ACTAGTGGAATTCGATCACACACTTTATCCATGCTTGTGAACGATGCTCCTEST: gi|17023140|gb|BM094174.1|BM094174
genomic: CAGTCAATCAAGTACTTGATGCTCACTGGGGTGTCCTCAATGAAGAAGATgtaagtggtt ... atgccttcagACTAGTGGAATTCGATCACACACTTTATCCATGCTTGTGAACGATGCTCCT
EST: CAGTCAATCAAGTACTTGATGCTCACTGGGGTGTCCTCAATGAAGAAGAT ACTAGTGGAATTCGATCACACACTTTATCCATGCTTGTGAACGATGCTCCT
genomic: CAGTCAATCAAGTACTTGATGCTCACTGGGGTGTCCTCAATGAAGAAGATgtaagtggtt ... atgccttcagACTAGTGGAATTCGATCACACACTTTATCCATGCTTGTGAACGATGCTCCT
tattcatcaattttctgaatgacatgtcttactgttggtgggataatgccttcagACTAGTGGAATTCGATCACACACTTTATCCATGCTTGTGAACGATGCTCCTGGAGTTCTAAACATTGTTACAGGAGTTTTTGCTAGAAGAGGCTATAACA
gtcttac putative branch site (score: 3)
tgccttc putative PPT
atcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcctgtgccttcactactatgtttattgtacattagcatgtaatattcatcaattttctgaatgacatgtcttactgttggtgggataatgccttcagACTAGTGGAATTCGATCACACACTTTATCCATGCTTGTGAACGATGCTCCTGGAGTTCTAAACATTGTTACAGGAGTTTTTGCTAGAAGAGGCTATAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
-ctcctgt
- - - - -ccttcac
- - - - - - - - - - - - - - - - - - -gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtggg