Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaaccaactgtcctgaaagtttaagcgtattttttttgagtgtgatgttgtttctatgaattatgttcattttcgtaattcaataattttcatcttattggaactctcagATGGTCTCAGATAGACAGAAGAAAGAATCTGCTCCTCCAGTAGGTATTTCTGAGAATGGCTCAGAGAAAACAATGTACTTCTTGGCTGAA

Basic information

species Glycine max
transcript GLYMA08G12810.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014844|gb|CX701586.1|CX701586
EST:     GTGAAA-TGAAAGTTGAG                         ATGGTCTCAGATAGACAGAAGAAAGAATCTGCTCCTCCAGTAGGTATTTC
genomic: GTGAAATTG-AAGCTGAGgtgagaacca ... gaactctcagATGGTCTCAGATAGACAGAAGAAAGAATCTGCTCCTCCAGTAGGTATTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaattatgttcattttcgtaattcaataattttcatcttattggaactctcagATGGTCTCAGATAGACAGAAGAAAGAATCTGCTCCTCCAGTAGGTATTTCTGAGAATGGCTCAGAGAAAACAATGTACTTCTTGGCTGAA
                                                ctctc  CT-rich tract
                    taattcaataattttc  TA-rich tract