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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaaataccaaaagccttgtcactaacctatcctaattgtgttgtgtgcagTACTTGAAAAATTTTCAGATAAGACAAGTACCTATACTAGAGAGATTTGCTCTACTCATATCAACAACAGTGATATGGGCATATGCACATTTGTTAACAG

Basic information

species Glycine max
transcript GLYMA08G12360.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G12360.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv10s0003g01460.t01 (Vitis vinifera), 3'ss of exon 6
------------------------------------------------gtcaaataccaaa-agccttgtcactaacctatcctaattgtgttgtgtgcagTACTTGAAAAATTTTCAGATAAGACAAGTACCTATACTAGAGAGATTTGCTCTACTCATATCAACAACAGTGATATGGGCATATGCACATTTGTTAACAG
                                                |      | |||| |  |||   | | |  | | || | | | ||||  ||||||||||||| ||||||| | || |||| | ||| |||| ||| | ||||| || || ||||||   |||||||||||||||||||||||| | || ||||
taagcaaactagccagattactagtagtatgaaccttggatagtattagctgggaagcaaatattctttctaattatgtgtgcttact-ttttgttcgcagTACTTGAAACATTTTCAAACAAAACAACTGCCTGTACTGGAGCGTTTTGCACTCCTTATATCAGTCACAGTGATATGGGCATATGCACATCTCTTGACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcaaataccaaaagccttgtcactaacctatcctaattgtgttgtgtgcagTACTTGAAAAATTTTCAGATAAGACAAGTACCTATACTAGAGAGATTTGCTCTACTCATATCAACAACAGTGATATGGGCATATGCACATTTGTTAACAG
                                          taattgt  TA-rich tract