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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctcaatgttttattggagtagctaataactaacttgtttctgaatttttattcaagcttctgccataatcaggcactcctattggtctttctctccatgctgatattgacattattgatattttgttgttagGGCAAGGATGTATTTGAAGCATTCTATAAGAAAGATCTTGCTAAAAGACTGCTTTTAGGAAAGAGTGCTTCTATTGACGGTGAGAAATCTATGATCTCCA

Basic information

species Glycine max
transcript GLYMA08G10180.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G10180.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G704093_T02 (Zea mays), 3'ss of exon 7
gtatgctcaatgttttattggagtagctaataactaacttgtttctgaatttttattcaagcttctgccataatcaggcactcctattggtctttctctccatgctgatattgacattattgatattttgttgttagGGCAAGGATGTATTTGAAGCATTCTATAAGAAAGATCTTGCTAAAAGACTGCTTTTAGGAAAGAGTGCTTCTATTGACGGTGAGAAATCTATGATCTCCA
                              |   ||| |  ||||  || |   |     | ||  ||  |||   |  |   | |||      |   |  ||    |  || | |||  | ||  | ||     |||| || ||||||||||| |||||||| ||||||||||| ||||| ||  ||||  | || ||||| || || || || | ||| ||||| |||||| | |
------------------------------ttgttaaatgatttc-aaactaacaaaattgtttaagcgctaactggaaaactcaattatataatagtttaattgcaagctttatatt--tcatcatctgc----agGGTAAAGATGTATTTGAGGCATTCTACAAGAAAGATCTAGCTAAGAGGTTGCTGCTTGGGAAGAGCGCATCAATAGATGCTGAAAAATCGATGATCACAA

upper sequence: GLYMA08G10180.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G46210.1 (Arabidopsis thaliana), 3'ss of exon 7
-gtatgctcaatgttttattggagtagctaataactaacttgtttctg--aattttta-ttcaagcttctgccataatcaggcactc--ctattggtctttctctccat-gctgatattgacat-tattgatattttgttgttagGGCAAGGATGTATTTGAAGCATTCTATAAGAAAGATCTTGCTAAAAGACTGCTTTTAGGAAAGAGTGCTTCTATTGACGGTGAGAAATCTATGATCTCCA
  |||    ||| | |||       |  || ||      ||||  |||  |||   |  ||| ||       |||  || |  |  |  ||||| |   ||||    || | |  |  |||    | || ||  ||| |    |||| || ||||| || |||||||| || || || |||||||| || ||||| || || |||||||||||||| || || | ||||||||| |||||||| |
gttatctctaatttcttac------atttagtactgtgtttgtcactgtaaatcactgcttcgaggccagtgcatggtctgtaaaccagctatttgatcttctggatatcggttttgctgatggatttttattatttatcaa-agGGTAAAGATGTGTTCGAAGCATTTTACAAAAAGGATCTTGCGAAGAGACTCCTGTTGGGAAAGAGTGCTTCAATCGATGCTGAGAAATCCATGATCTCTA

upper sequence: GLYMA08G10180.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S70_181V6.1 (Physcomitrella patens), 3'ss of exon 7
gtatgctcaatgttttattggagtagctaataactaacttgtttctgaatttttattcaagcttctgccataatcaggcactcctattggtctttctctccatgctgatattgacattattgatatt--ttgttgttagGGCAAGGATGTATTTGAAGCATTCTATAAGAAAGATCTTGCTAAAAGACTGCTTTTAGGAAAGAGTGCTTCTATTGACGGTGAGAAATCTATGATCTCCA
                                     ||||  | || ||| |  || |||  | |   ||| |    |  |  || | || |     |  |||    | | ||  |  ||  || |  ||      |||| || |||||||||||||| ||||| ||||| |||||||||||  |  ||||| |||||||||| || || ||||| |  |||||||| ||||| || |
----------------------------------cctcttgaat-tggattgtctttgaagtgtgt---atatttgtac-ttgataattgtttcagatttaatgtatttttggatgtgttttttaatggttaaatccagGGTAAAGATGTATTTGAAGCTTTCTACAAGAAGGATCTTGCTAAGCGCTTGCTTCTAGGAAAGAGCGCCTCCATTGATGCAGAGAAATCCATGATATCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctattggtctttctctccatgctgatattgacattattgatattttgttgttagGGCAAGGATGTATTTGAAGCATTCTATAAGAAAGATCTTGCTAAAAGACTGCTTTTAGGAAAGAGTGCTTCTATTGACGGTGAGAAATCTATGATCTCCA
                                           ttttgtt  CT-rich tract
                         atattgacattattga  TA-rich tract