1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gacaatttacatgtttcaagagttaggttcctgcatagattagatgttgaatgtatgtttctgcttctaatcttctatacatgcaactggacttctgtagAAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAAAAGGAAAGTTTCTTGATGTTGTATCTGGTATTATCGTTACAAACCAGAA
species | Glycine max |
transcript | GLYMA08G09180.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAAEST: gi|209712036|gb|BW674181.1|BW674181
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAA
EST: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAAEST: gi|12497023|gb|BG047358.1|BG047358
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAA
EST: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAAEST: gi|7690873|gb|AW759009.1|AW759009
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAA
EST: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAAEST: gi|5677094|gb|AI938224.1|AI938224
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAA
EST: GAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAAEST: gi|10252825|gb|BE820591.1|BE820591
genomic: GAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAA
EST: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAAEST: gi|51344888|gb|CO985621.1|CO985621
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAA
EST: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAAEST: gi|6725411|gb|AW309810.1|AW309810
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAA
EST: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAA
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAA
gttgaatgtatgtttctgcttctaatcttctatacatgcaactggacttctgtagAAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAAAAGGAAAGTTTCTTGATGTTGTATCTGGTATTATCGTTACAAACCAGAA
ttctaat putative branch site (score: 2)
cttctgt putative PPT
tatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacaatttacatgtttcaagagttaggttcctgcatagattagatgttgaatgtatgtttctgcttctaatcttctatacatgcaactggacttctgtagAAGCTGGAGGTATCGCCATGGATGCTGCGGGGAACCCTCTGGACTTTTCAAAAGGAAAGTTTCTTGATGTTGTATCTGGTATTATCGTTACAAACCAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - -tacatgt
- - - - - - - - - - - - - - tcctgca
- - - - - - - - - - - - - - - - - - - - - gatgttg
- - - - - - - - - - - - - - - - - - - - - - - - - atgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgca