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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacagaactggttttttattattcattgcctgaattgtgtatcatattctgaaaactttgataaattttcgatgcttcccttttgcttgtaatctcatgattgattttaaaacatatggtgtatgatgcagATTAGCCATCGGATCAACAAATTAAGTTTTGGTCACCATTTCCCTGGATTGGTAAATCCTCTTGATGG

Basic information

species Glycine max
transcript GLYMA08G07840.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07840.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0178g00020.t01 (Vitis vinifera), 3'ss of exon 7
gtaagacagaactg-gttttttattattcattgcctga-attgtgtatcatattctgaaaactttgataaattttcgatgcttcccttttg--cttgtaatctcatgattgattttaaaacatatggtgtatgatgcagATTAGCCATCGGATCAACAAATTAAGTTTTGGTCACCATTTCCCTGGATTGGTAAATCCTCTTGATGG
|||||||  |  |  | ||||||||     || | | | ||| | |||   ||||  |   |||  |||    |  | |  |||  ||||    || || | ||||   |  |||| ||    ||||   ||||||||||| || ||  ||||||| ||||||  ||||||  |||||||||||||  | |||||||| ||||||||
gtaagacgtagttttggtttttatttcattttactttacattctatatttaattcc-atctcttcaatattaatctgttttttcatttttaaatttttagtgtcat--cttgtttttaacttcatggcacatgatgcagATAAGTCACAGGATCAATAAATTAGCTTTTGGAGACCATTTCCCTGGTGTTGTAAATCCCCTTGATGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcccttttgcttgtaatctcatgattgattttaaaacatatggtgtatgatgcagATTAGCCATCGGATCAACAAATTAAGTTTTGGTCACCATTTCCCTGGATTGGTAAATCCTCTTGATGG
                      gattgat  putative branch site (score: 4)
                    atgattgattttaaaa  TA-rich tract