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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcattttctgtagatatgattgaccccttcacatttctgtacccgtggcagtaccggacagttgattttagcgactgattgatgggttttatttctgcagAGTGAGGTAGCAGCTGGGAGTATAAATCTTAATGGAACTCTTACAATGGAAGTGCAGAGACCAGGTAGTGAGACTGCTATGGCAAACATTGTTCGTCTAG

Basic information

species Glycine max
transcript GLYMA08G07710.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07710.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0142g00400.t01 (Vitis vinifera), 3'ss of exon 4
tcatt-ttctgtagatatgattgaccccttcacatttctgtacccgtggcagtaccggacagttgattttagcgactgattgatgggttttatttctgcagAG-TGAGGTAGCAGCTGGGAGTATAAATCTTAATGGAACTCTTACAATGGAAGTGCAGAGACCAGGTAGTGAGACTGCTATGGCAAACATTGTTCGTCTAG
| ||| ||   ||  || |         || |   |     |   ||  |  |   | |||||  || ||| | |  | ||  |   |  | | ||||||  | ||| ||  |||| ||||| ||||| || ||||||||||||| | | ||||||| ||| |||||| |||| |||||||||| | ||||||| || || |
ttattgtttcataagtaggggcacttagtttagtgtaaaaaattggtctcttttttgcacagtc-atattatc-atgggtttttttttcctctctctgcaagGCTGAAGTTTCAGCAGGGAGCATAAACCTAAATGGAACTCTTAGAGTTGAAGTGCGGAGGCCAGGTGGTGAAACTGCTATGGGAGACATTGTCCGCCTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6134590|gb|AW132983.1|AW132983
EST:     CAAGTTTTACTGGTGAACCACTGCCTGTAACAAAAGTACCTGGG                         AGTGAGGTAGCAGCTGGGAGTATAAATCTTAATGGAACTCTTACAATGGAA
genomic: CAAGTTTTACTGGTGAACCACTGCCTGTAACAAAAGTACCTGGGgtactttcta ... atttctgcagAGTGAGGTAGCAGCTGGGAGTATAAATCTTAATGGAACTCTTACAATGGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggcagtaccggacagttgattttagcgactgattgatgggttttatttctgcagAGTGAGGTAGCAGCTGGGAGTATAAATCTTAATGGAACTCTTACAATGGAAGTGCAGAGACCAGGTAGTGAGACTGCTATGGCAAACATTGTTCGTCTAG
                                         ttttatttct  CT-rich tract
                                         ttttatttct  TA-rich tract