1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagctgctgtctttcagatggcacaatccttgttaggtcatattgaacaaatgaacactaacctgctcagaatgttgtagGTTGTTTTTCTTGTTGAGACGCTTTCCCATAGAATCCAGAGGCCGTCAAAAGAAACTTTACGAG
species | Glycine max |
transcript | GLYMA08G07670.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTATATCATTCTTTGCGGCTCTTGCATTTTTATTGTATGGTGGAAG GTTGTTTTTCTTGTTGAGACGCTTTCCCATAGAATCCAGAGGCCGTCAAAAEST: gi|192307420|gb|FK000762.1|FK000762
genomic: TTATATCATTCTTTGCGGCTCTTGCATTTTTATTGTATGGTGGAAGgtaagctgct ... aatgttgtagGTTGTTTTTCTTGTTGAGACGCTTTCCCATAGAATCCAGAGGCCGTCAAAA
EST: TTTTTATTGTATGGTGGAAG GTTGTTTTTCTTGTTGAGACGCTTTCCCATAGAATCCAGAGGCCGTCAAAAEST: gi|192307419|gb|FK000761.1|FK000761
genomic: TTTTTATTGTATGGTGGAAGgtaagctgct ... aatgttgtagGTTGTTTTTCTTGTTGAGACGCTTTCCCATAGAATCCAGAGGCCGTCAAAA
EST: TTATATCATTCTTTGCGGCTCTTGCATTTTTATTGTATGGTGGAAA GTTGTTTTTCTTGTTGAGACGCTTTCCCATAGAATCCAGAG-CCGTCAAA-
genomic: TTATATCATTCTTTGCGGCTCTTGCATTTTTATTGTATGGTGGAAGgtaagctgct ... aatgttgtagGTTGTTTTTCTTGTTGAGACGCTTTCCCATAGAATCCAGAGGCCGTCAAAA
atccttgttaggtcatattgaacaaatgaacactaacctgctcagaatgttgtagGTTGTTTTTCTTGTTGAGACGCTTTCCCATAGAATCCAGAGGCCGTCAAAAGAAACTTTACGAG
cactaac putative branch site (score: 1)
atattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctgctgtctttcagatggcacaatccttgttaggtcatattgaacaaatgaacactaacctgctcagaatgttgtagGTTGTTTTTCTTGTTGAGACGCTTTCCCATAGAATCCAGAGGCCGTCAAAAGAAACTTTACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA