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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatcacccatctttgtgatcatgtaatgtttaattatttttcttgcgataacacgggattttaatttcagTAATTTCATCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCTCAAAGGATGGTCACCAATTTTTGTGCCAACATTAGCACATCAAGTGGCCATCGATG

Basic information

species Glycine max
transcript GLYMA08G06190.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06190.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 7
---------------------------gtatatcaccc-atctttgtgatcatgtaatgtttaattattt--ttcttgcgataacacgggattttaattt-cagTAATTTCATCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCTCAAAGGATGGTCACCAATTTTTGTGCCAACATTAGCACATCAAGTGGCCATCGATG
                             | | | | | |       | ||   ||||| || ||  |    | |      ||||| |   |||   ||| |||| ||| |||||||||| |||||||| ||||||||||||||||| || |||||||||| |||||| ||||| | ||| ||||| || | ||| || |||||
gtacttcagataaaaaaaaaaggacaaaaaaacctctcgaagaaaacgttctcctaatgcttgatcctcaaatgcaaatactaacaagctctttggttttacagTGATTCCATCTCCTGATGGCAAGAGAAGCATGATGAAACTTGCCCAGAGGATGGTCAACAATTTCTGTGCAAGCATCAGCACCTCCAATGGACACCGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatcatgtaatgtttaattatttttcttgcgataacacgggattttaatttcagTAATTTCATCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCTCAAAGGATGGTCACCAATTTTTGTGCCAACATTAGCACATCAAGTGGCCATCGATG
                                           ttttaat  putative branch site (score: 3)
     atgtaatgtttaatta  TA-rich tract