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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgcctacttttgacagacggaacctgcagaaggaatccttgttcattttgtaattgtatcttttggctggacagGTTGAACCTAATGCCCTTAAAATCGAGGAGCATAGGAGAAAATATGAACGCTTAAGAAAGCAAAAGCAACAGAAAAGAGCTCCTATCAAGACTGAAGCTC

Basic information

species Glycine max
transcript GLYMA08G06010.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207814664|gb|GD788573.1|GD788573
EST:     TGGCTTCAAAGTTAGATTACGATGAAGAGATTAGTATGGCACTTAAAAAG                         GTTGAACCTAATGCCCTTAAAATCGAGGAGCATAGGAGAAAATATGAACGC
genomic: TGGCTTCAAAGTTAGATTACGATGAAGAGATTAGTATGGCACTTAAAAAGgtatttgcct ... ggctggacagGTTGAACCTAATGCCCTTAAAATCGAGGAGCATAGGAGAAAATATGAACGC
EST: gi|308222667|gb|HO760642.1|HO760642
EST:     TGGCTTCAAAGTTAGATTACGATGAAGAGATTAGTATGGCACTTAAAAAG                         GTTGAACCTAATGCCCTTAAAATCGAGGAGCATAGGAGAAAATATGAACGC
genomic: TGGCTTCAAAGTTAGATTACGATGAAGAGATTAGTATGGCACTTAAAAAGgtatttgcct ... ggctggacagGTTGAACCTAATGCCCTTAAAATCGAGGAGCATAGGAGAAAATATGAACGC
EST: gi|10709205|gb|BF008929.1|BF008929
EST:     GAGATTAGTAT-GCACTTAAAAAG                         GTTGAACCTAATGCCCTTAAAATCGAGGAGCATAGGAGAAAATATGAACGC
genomic: GAGATTAGTATGGCACTTAAAAAGgtatttgcct ... ggctggacagGTTGAACCTAATGCCCTTAAAATCGAGGAGCATAGGAGAAAATATGAACGC
EST: gi|254343946|gb|GR857702.1|GR857702
EST:     TGGCTTCAAAGTTAGATTACGATGAAGAGATTAGTATGGCACTTAAAAAG                         GTTGAACCTAATGCCCTTAAAATCGAGGAGCATAGGAGAAA-TATGAACGC
genomic: TGGCTTCAAAGTTAGATTACGATGAAGAGATTAGTATGGCACTTAAAAAGgtatttgcct ... ggctggacagGTTGAACCTAATGCCCTTAAAATCGAGGAGCATAGGAGAAAATATGAACGC
EST: gi|254324847|gb|GR834272.1|GR834272
EST:     TGGCTTCAA-GTTAGATTACGATGAAGAGATTAGTATGGCACTTAAAAAG                         GTTGAACCTAATGCCCTTAAAATCGAGGAGCATAG-AGAAA-TATGAACGC
genomic: TGGCTTCAAAGTTAGATTACGATGAAGAGATTAGTATGGCACTTAAAAAGgtatttgcct ... ggctggacagGTTGAACCTAATGCCCTTAAAATCGAGGAGCATAGGAGAAAATATGAACGC
EST: gi|11413289|gb|BF425300.1|BF425300
EST:     TGGCTTCAAAGTTAGATTACGATGAAGAGATTAGTATGGCACTTAAAAAG                         GTTGAACCTAATGCCCTTAAAATCCAGGAGCATAGGAGAAAATATGAACGC
genomic: TGGCTTCAAAGTTAGATTACGATGAAGAGATTAGTATGGCACTTAAAAAGgtatttgcct ... ggctggacagGTTGAACCTAATGCCCTTAAAATCGAGGAGCATAGGAGAAAATATGAACGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaacctgcagaaggaatccttgttcattttgtaattgtatcttttggctggacagGTTGAACCTAATGCCCTTAAAATCGAGGAGCATAGGAGAAAATATGAACGCTTAAGAAAGCAAAAGCAACAGAAAAGAGCTCCTATCAAGACTGAAGCTC
                                       tcttttg  CT-rich tract
                         attttgtaattgtat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatttgcctacttttgacagacggaacctgcagaaggaatccttgttcattttgtaattgtatcttttggctggacagGTTGAACCTAATGCCCTTAAAATCGAGGAGCATAGGAGAAAATATGAACGCTTAAGAAAGCAAAAGCAACAGAAAAGAGCTCCTATCAAGACTGAAGCTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC