1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttggcactataatgtacttgtcaccagtgctctcattgcctgtgaactgactgacttgaaaacattttaaacttttgttgtattttgtgcctggtacagGAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTCGGAGAAGAGTAGAGCAAAACTGGATAGCCGTAATTGTGAAAAAGATTTAGAGATGT
species | Glycine max |
transcript | GLYMA08G05260.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAATGTATCCAGGGCTTCTCCAGAAACAAAAGTTACAACTTTAACAAAG GAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTCGGAGAAGEST: gi|22927616|gb|BU544755.1|BU544755
genomic: GAAATGTATCCAGGGCTTCTCCAGAAACAAAAGTTACAACTTTAACAAAGgtgtggtgtt ... cctggtacagGAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTCGGAGAAG
EST: GAAATGTATCCAGGGCTTCTCCAGAAACAAAAGTTACAACTTTAACAAAG GAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTCGGAGAAGEST: gi|193349272|gb|FK314050.1|FK314050
genomic: GAAATGTATCCAGGGCTTCTCCAGAAACAAAAGTTACAACTTTAACAAAGgtgtggtgtt ... cctggtacagGAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTCGGAGAAG
EST: GAAATGTATCCAGGGCTTCTCCAGAAACAAA-GTTACAACTTTAACAAAG GAGTCCTTACTTGCTA
genomic: GAAATGTATCCAGGGCTTCTCCAGAAACAAAAGTTACAACTTTAACAAAGgtgtggtgtt ... cctggtacagGAGTCCTTACTTGCTA
aactgactgacttgaaaacattttaaacttttgttgtattttgtgcctggtacagGAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTCGGAGAAGAGTAGAGCAAAACTGGATAGCCGTAATTGTGAAAAAGATTTAGAGATGT
gactgac putative branch site (score: 2)
aaaacattttaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggcactataatgtacttgtcaccagtgctctcattgcctgtgaactgactgacttgaaaacattttaaacttttgttgtattttgtgcctggtacagGAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTCGGAGAAGAGTAGAGCAAAACTGGATAGCCGTAATTGTGAAAAAGATTTAGAGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - -aatgtac
- - - - - - - - - -tgtcacc
- - - - - - - - - - - - - - - - - cattgcc
- - - - - - - - - - - - - - - - - - - - -tgtgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtg