1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...aacaagcaatcttgattttaattagatgatcaaatgttctatattcttatgcacttctactgattcaatcctctcttaccccatgattgaaattttgcagGTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTG
species | Glycine max |
transcript | GLYMA08G04890.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAA GTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTEST: gi|7146991|gb|AW508913.1|AW508913
genomic: TTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAAgtaagatttt ... aattttgcagGTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATT
EST: TTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAA GTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTEST: gi|14259175|gb|BG882083.1|BG882083
genomic: TTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAAgtaagatttt ... aattttgcagGTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATT
EST: TTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAA GTCAATTTTTGATTTTGAATCTATCAGGAAACTGEST: gi|6501948|gb|AW203321.1|AW203321
genomic: TTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAAgtaagatttt ... aattttgcagGTCAATTTTTGATTTTGAATCTATCAGGAAACTG
EST: TTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAA GTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTEST: gi|6567304|gb|AW234915.1|AW234915
genomic: TTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAAgtaagatttt ... aattttgcagGTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATT
EST: TTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAA GTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATT
genomic: TTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAAgtaagatttt ... aattttgcagGTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATT
cttatgcacttctactgattcaatcctctcttaccccatgattgaaattttgcagGTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTG
atgattgaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaagcaatcttgattttaattagatgatcaaatgttctatattcttatgcacttctactgattcaatcctctcttaccccatgattgaaattttgcagGTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTG
-acaagca
- - - - - - - - - - - - - - - - - - - - - - - -tatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tctactg