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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatataattttagtattgaggatagtagactattgtgtttaggaatataactgagcttcctgcacacatacttcactgttgatatttgacatctgtgattgtgaaaattgatttcatcaaagtagtaaacgcaccctgattatccacgcagGAAATTAGAAGGCGTCGTCTCAAAGTTGCAGTTGTAGGAATCCCCAAAACCATAGATAATGACATCCCG

Basic information

species Glycine max
transcript GLYMA08G03570.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03570.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 7
gtatatataattttagtattgagg-atagtagactattgtgtttaggaatataac---tgagcttcctgcacacatacttcactgtt----gatatt-tgacatctgtga--ttgtgaaaattgatttca--tcaaagtagtaaac-------gcaccctg-----------attatccacgcagGAAATTAGAAGGCGTCGTCTCAAAGTTGCAGTTGTAGGAATCCCCAAAACCATAGATAATGACATCCCG
|||  | || || ||  | ||    || |||    || || || || |||    |   | |  || |      | |  ||| |||||    || ||  ||   | |||||  ||    ||  |  |||      ||| |  ||  |       | |||||             |||     ||||||||||  ||||||| |||| |||||||||||||  ||||| |||||||| || ||||||||||| |||
gtaattttatttgtaaaactggaatatcgtaagtcatagt-ttgagaaatgctgcatataaatttacca-gttcctttttctctgttctcagaaatcctgctgtttgtgacatttcctaagctatttttgggctaaaatgatatgctgtagctgaaccctattgaactgattgttaattgtgcagGAAATTCAAAGGCGTGGTCTAAAAGTTGCAGTTGCTGGAATTCCCAAAACAATTGATAATGACATTCCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgtgaaaattgatttcatcaaagtagtaaacgcaccctgattatccacgcagGAAATTAGAAGGCGTCGTCTCAAAGTTGCAGTTGTAGGAATCCCCAAAACCATAGATAATGACATCCCG
                                     ccctgat  putative branch site (score: 4)
       aaaattgatttcat  TA-rich tract