1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttggaaaattaattcattttacttatcaacaaattttatcctgaaccaatgttcacccctcactcattgttttatactttctcatacatatatatatagGTGCTCAGGATGCTGGAAGGTGACATTCTCATGTGATTGCCTATCACATTTCCATTTCCCAAGAACATTAGTGTAGAACTAGTTTAAAGCTTCTTGCAGA
species | Glycine max |
transcript | GLYMA08G03340.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCTCTTTGTGCATCGGACGGGATCCTCATTTAAGGCCAAGAATGTCTCAG GTGCTCAGGATGCTGGAAGGTGACATTCTCATGTGATTGCCTATCACATTTEST: gi|193522087|gb|FK478166.1|FK478166
genomic: CCTCTTTGTGCATCGGACGGGATCCTCATTTAAGGCCAAGAATGTCTCAGgttggaaaat ... atatatatagGTGCTCAGGATGCTGGAAGGTGACATTCTCATGTGATTGCCTATCACATTT
EST: CGGGATCCTCATTTAAGGCCAAGAATGTCTCAG GTGCTCAGGATGCTGGAAGGTGACATTCTCATGTGATTGCCTATCACATTTEST: gi|213601646|gb|DB980889.1|DB980889
genomic: CGGGATCCTCATTTAAGGCCAAGAATGTCTCAGgttggaaaat ... atatatatagGTGCTCAGGATGCTGGAAGGTGACATTCTCATGTGATTGCCTATCACATTT
EST: CCTCTTTGTGCATCGGACGGGATCCTCATTTAAGGCCAAGAATGTCTCAG GTGCTCAGGATGCTGGAAGGTGACATTCTCATGTGATTGCCTATCACATTT
genomic: CCTCTTTGTGCATCGGACGGGATCCTCATTTAAGGCCAAGAATGTCTCAGgttggaaaat ... atatatatagGTGCTCAGGATGCTGGAAGGTGACATTCTCATGTGATTGCCTATCACATTT
accaatgttcacccctcactcattgttttatactttctcatacatatatatatagGTGCTCAGGATGCTGGAAGGTGACATTCTCATGTGATTGCCTATCACATTTCCATTTCCCAAGAACATTAGTGTAGAACTAGTTTAAAGCTTCTTGCAGA
ccctcac putative branch site (score: 3)
ttttatactttctcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggaaaattaattcattttacttatcaacaaattttatcctgaaccaatgttcacccctcactcattgttttatactttctcatacatatatatatagGTGCTCAGGATGCTGGAAGGTGACATTCTCATGTGATTGCCTATCACATTTCCATTTCCCAAGAACATTAGTGTAGAACTAGTTTAAAGCTTCTTGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC