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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttgctgctttcatgatactagtgtcctctacagatgttgttcaattgatgtttgtaactcattggtatgttatgttgtaattgaacagGGGTACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCAAATGGCATTCTAAATGTGAAGGCAGAAGACAAGGGCACTGGTAAATCAGAAAAGATAACA

Basic information

species Glycine max
transcript GLYMA08G02960.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02960.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os02g02410.1 (Oryza sativa), 3'ss of exon 7
gtttgtttgctgctttcatgatactagtgtcctct-acagatgttgttcaattgatgtttgtaactcattggtatgttatgttgtaattgaacagGGGTACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCAAATGGCATTCTAAATGTGAAGGCAGAAGACAAGGGCACTGGTAAATCAGAAAAGATAACA
    |||||||  | ||  || |  | |||   || ||  |  | | | |||  ||    |   || ||   | ||||  |||  | |||  |||||| ||||| || ||||| ||||||||||| || || || || ||||| || || |||||||| || ||||||||||| || || || || ||||| || 
----gtttgctcatgtccagaaaaaaatgttagcttactcaaatggataaatgaat-ccagcgcctgat--atctgttg-gttaaacttg--cagGGGCACCCCCCAGATTGAGGTGACCTTCGAGGTGGACGCCAACGGCATCCTGAACGTGAAGGCTGAGGACAAGGGCACCGGCAAGTCGGAGAAGATCACG

upper sequence: GLYMA08G02960.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G28540.1 (Arabidopsis thaliana), 3'ss of exon 5
gtttgtttgctgctttcatgatactagtgtcctctacagatgttgttcaattgatgtttgtaactcattggtatgttatgttgtaattgaacagGGGTACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCAAATGGCATTCTAAATGTGAAGGCAGAAGACAAGGGCACTGGTAAATCAGAAAAGATAACA
||||| || |   | |  |    ||         || |   |    ||| ||      |  || | |||    ||  || | ||  ||  |||| || ||||||||||| || || || |||||||| || || || || ||||| |||||||| ||||| |||||||  | |||||||||||| ||||| || 
gtttgcttccacttcttttaccccttagtaatggtaaatcagagtctcattttgaacattaaaataattatcctg--atctcgt--tttgacagAGGAACCCCTCAAATCGAGGTCACATTCGAAGTGGACGCCAACGGTATTCTTAATGTGAAAGCAGAGGACAAGGCGAGTGGTAAATCAGAGAAGATTACT

upper sequence: GLYMA08G02960.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv16s0098g01580.t01 (Vitis vinifera), 3'ss of exon 7
gtttgtttgctgctttcatgatactagtgtcctctacagatgttgttc------aattgatgtttg-taactcattggtatgttatgttgtaattgaacagGGGTACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCAAATGGCATTCTAAATGTGAAGGCAGAAGACAAGGGCACTGGTAAATCAGAAAAGATAACA
  || |            || |    ||    ||||   |||||  ||      ||||  |||||| | ||| |   | ||    |  | |  ||| |||| || ||||||||||||||||| || || || |||||||| ||||||||||||||||| ||||| |||||||| |   | || ||||| || || || |||
-gttatccctcatgcctttggtctctgttctatctaatcatgtttctcctatcaaatttgtgtttgcttactgaccaggatcaacttgtttgtttggacagAGGGACCCCTCAAATTGAAGTCACGTTTGAGGTTGATGCCAATGGCATTCTAAATGTAAAGGCTGAAGACAAAGCTTCAGGGAAATCTGAGAAAATCACA

upper sequence: GLYMA08G02960.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv02s0025g02140.t01 (Vitis vinifera), 3'ss of exon 7
gtttgtttgctgctttcatgatactagtgtcctctacagatgttgttcaattgatgtttgtaactcat-tggtatgttatgttgta-attgaacagGGGTACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCAAATGGCATTCTAAATGTGAAGGCAGAAGACAAGGGCACTGGTAAATCAGAAAAGATAACA
    ||||||        |          || |||  | |  |  | | | ||  |   | || | || || ||   |   |  ||  ||||||||||| ||||| ||||||||||| || || |||||||| |||||||| || |||||||| ||||| || ||||||||||| ||||||||||| ||||| || 
----gtttgcgaaacctgtccactccaactcttctgtaaa-atactcctactgtaggcagaaattgatgtgataatctgattcctatgttgaacagGGGAACCCCACAAATTGAAGTCACGTTTGAAGTTGACGCAAATGGTATCCTAAATGTCAAGGCTGAGGACAAGGGCACGGGTAAATCAGAGAAGATCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttgttcaattgatgtttgtaactcattggtatgttatgttgtaattgaacagGGGTACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCAAATGGCATTCTAAATGTGAAGGCAGAAGACAAGGGCACTGGTAAATCAGAAAAGATAACA
                  ttgtaac  putative branch site (score: 2)
                                tatgttat  TA-rich tract