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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtattttctcttcaattgaatagaggtaatcatgtaaaattcatcgtttctgatctttagtgtactttttgcagGTATATCCAACTCATTTGGATTCGGTGGACACAATTCAGTAGTTGTCTTTGCCCCATTCAGGCCATAAGTAGGATTCAAACTCAATCTGAGTATTTCTTT

Basic information

species Glycine max
transcript GLYMA08G02850.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02850.2 (Glycine max), 3'ss of exon 7
lower sequence: PP1S201_89V6.1 (Physcomitrella patens), 3'ss of exon 7
-----------gtatgtattttctcttcaattgaatagaggtaatcat-gtaaa-attcatcgtttctgatctttagtgtactt---------tttgcagGTATATCCAACTCATTTGGATTCGGTGGACACAATTCAGTAGTTGTCTTTGCCCCATTCAGGCCATAAGTAGGATTCAAACTCAATCTGAGTATTTCTTT
            | | ||       | || ||||    |  ||||  | |     |  | |  | | |  | | || | ||            | ||||| ||| || ||||||||||| |||||||||||||||||    ||||| || || || | |||||| | |  | |      |   | ||    |||||    
acagtgtatctctgtttaggcagattacagttgagctcaattaattgttgcgcgtacccgtattgtttactttctaatatatccacactgtgatatgcagCTATCTCAAACTCATTTGGGTTCGGTGGACACAATTCCTGCGTTGTTTTCGCTCCTTACAGGCCTTGAAGAAGCGCACTAAAGATTCCTGTTATTTTCAC

upper sequence: GLYMA08G02850.2 (Glycine max), 3'ss of exon 7
lower sequence: EFJ32129 (Selaginella moellendorffii), 3'ss of exon 6
gtatgtattttctcttcaattgaatagaggtaatcatgtaaaattcatcgtttctgatctttagtgtactttttgcagGTATATCCAACTCATTTGGATTCGGTGGACACAATTCAGTAGTTGTCTTTGCCCCATTCAGGCCATAAGTAGGATTCAAACTCAATCTGAGTATTTCTTT
         |      |||||   |     |     | |  ||   |  ||  || |  || |    | ||| ||||| ||| || ||||| ||||||||||||||||||||||| || |||||||| || ||||||| ||| | |                                
--------gtgagtcgcaatt---tgcgtttctctctctcgaagctagtgtg-ctcacgttcaa---attttgtgcagCTATTTCGAACTCGTTTGGATTCGGTGGACACAATTCCGTCGTTGTCTTCGCTCCATTCAAGCCTTGA--------------------------------

upper sequence: GLYMA08G02850.2 (Glycine max), 3'ss of exon 7
lower sequence: EFJ37714 (Selaginella moellendorffii), 3'ss of exon 6
gtatgtattttctcttcaattg-aatagaggtaatcatgtaaaattcatcgtttctgatctttagtgtactttttgcagGTATATCCAACTCATTTGGATTCGGTGGACACAATTCAGTAGTTGTCTTTGCCCCATTCAGGCCATAAGTAGGATTCAAACTCAATCTGAGTATTTCTTT
               | | | | |||    ||  |  | |       | |   | || ||        | ||| ||||| ||| || ||||| ||||||||||||||||||||||| || |||||||| || ||||||| ||| | |                                
--------------gtaagtcgcaatttgtgtttttctctctctcgaagctagtgtgctcacgctcaaattttgtgcagCTATTTCGAACTCGTTTGGATTCGGTGGACACAATTCCGTTGTTGTCTTCGCTCCATTCAAGCCTTGA--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6718887|gb|AW306534.1|AW306534
EST:     TACAATTGACACTGTCCCTAACGTTAAGAAGAAGCATGAAGTTAATGTTG                         GTATATCCAACTCATTTGGATTCGGTGGACACAATTCAGTAGTTGTCTTTG
genomic: TACAATTGACACTGTCCCTAACGTTAAGAAGAAGCATGAAGTTAATGTTGgtatgtattt ... ctttttgcagGTATATCCAACTCATTTGGATTCGGTGGACACAATTCAGTAGTTGTCTTTG
EST: gi|58018638|gb|CX705380.1|CX705380
EST:     TACAATTGACACTGTCCCTAACGTTAAGAAGAAGCATGAAGTTAATGTTG                         GTATATCCAACTCATTTGGATTCGGTGGACACAATTCAGTAGTTGTCTTTG
genomic: TACAATTGACACTGTCCCTAACGTTAAGAAGAAGCATGAAGTTAATGTTGgtatgtattt ... ctttttgcagGTATATCCAACTCATTTGGATTCGGTGGACACAATTCAGTAGTTGTCTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagaggtaatcatgtaaaattcatcgtttctgatctttagtgtactttttgcagGTATATCCAACTCATTTGGATTCGGTGGACACAATTCAGTAGTTGTCTTTGCCCCATTCAGGCCATAAGTAGGATTCAAACTCAATCTGAGTATTTCTTT
                            ttctgat  putative branch site (score: 3)
                                           tacttttt  putative PPT
       taatcatgtaaaatt  TA-rich tract