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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtcatcattattcttgctttatgtccctctcgttaaaactcttgcagtgatgataatatactaatcagctttaatttcttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCTTCTCCAG

Basic information

species Glycine max
transcript GLYMA08G02610.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9440190|gb|BE440700.1|BE440700
EST:     GCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
genomic: GCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
EST: gi|22524879|gb|BU083690.1|BU083690
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
EST: gi|19270738|gb|BM886994.1|BM886994
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
EST: gi|10233073|gb|BE802018.1|BE802018
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGTCTATAACCAGCTTCTGCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
EST: gi|22524818|gb|BU083629.1|BU083629
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
EST: gi|19937468|gb|BQ081301.1|BQ081301
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCA
EST: gi|7795347|gb|AW780806.1|AW780806
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGCTGT-ACCAAGCCTCAACCAACCCCCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
EST: gi|10847469|gb|BF070151.1|BF070151
EST:     TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAG                         TTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA
genomic: TCTGGCAAGACTAGGTGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGgtattgtcat ... ttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaactcttgcagtgatgataatatactaatcagctttaatttcttccttgcagTTGTTGTTCCAGCTCCTAAGCCTGCTGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCTTCTCCAG
                                   ctttaatttcttcctt  CT-rich tract
                atgataatatactaat  TA-rich tract