Sequence
atgc intronic sequence ATGC exonic sequencegtaagaaatgttaacaatttcttttcaattgtttttattagggaatttgttcagtgctgtgtgatgtaatcaatgttatctttatgacagATAGCAACGGCTCTTTTTGCAAATTCACCCTTTAAAGAGGGAAAGCCAAATGGTTTTTTCAGTATGAGAAG
Basic information
species | Glycine max |
transcript | GLYMA08G01750.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G01750.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G23100.3 (Arabidopsis thaliana), 3'ss of exon 7
gtaagaaatgttaacaatttctttt-----caattgtttttattagggaatttgttcagtgctgtgtgatgtaatcaatgttatctttat--gacagATAGCAACGGCTCTTTTTGCAAATTCACCCTTTAAAGAGGGAAAGCCAAATGGTTTTTTCAGTATGAGAAG
|| |||| | | ||| | || |||||||| || |||| | || ||| | |||||| || |||||||||||||||||| ||||| ||||| || |||| ||| ||||||||||| || ||| |||| ||||||||
gtgagaagctcgatctctttgtggcataaccagaaacttttattaacgattttgacta-------accattgcctcactattatctaaattcaacagATAGCAACGGCTCTATTTGCGAATTCCCCTTTTACAGAAGGAAAGCCAAACGGATTTCTCAGCATGAGAAG
upper sequence: GLYMA08G01750.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv02s0025g03530.t01 (Vitis vinifera), 3'ss of exon 7
gtaagaaatgttaacaatttcttttcaattgtttttattagggaatttgttcagtgctgtgtgatgtaatcaatgttatctttatgacagATAGCAACGGCTCTTTTTGCAAATTCACCCTTTAAAGAGGGAAAGCCAAATGGTTTTTTCAGTATGAGAAG
|| ||||| || | |||||| ||| ||||| || ||| | | || | || ||| | | |||||||||||||||||| ||||||||||| || ||| ||||||||||||| ||||| | |||| ||||||||
gtgagaaactttgatgatttctattc--ttgtt-------ggaaatatctctcgtctaattgtatctaactggtagcgctaatgcaacagATAGCAACGGCTCTATTTGCAAATTCTCCTTTTGTTGAGGGAAAGCCAAGTGGTTATCTCAGCATGAGAAG
upper sequence: GLYMA08G01750.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S479_14V6.1 (Physcomitrella patens), 3'ss of exon 6
------------------------------------------------------------------gtaagaaatgttaacaatttcttttc-------aattgttttta---ttagggaatttgttcagtgctgtgtgatgtaatc---aatgttatctttatgacagATAGCAACGGCTCTTTTTGCAAATTCACCCTTTAAAGAGGGAAAGCCAAATGGTTTTTTCAGTATGAGAAG
| | |||| || | ||| |||| | |||| | | | ||| || ||| || | | |||| | | |||||||| |||||||| ||||| ||||| || |||||||| ||||| | || || ||||| ||||||||||| || | || ||
gtaagtgcagagtttcttattttctattaaggtggcttcttttgtccattatgttgtgtactctattcatcacctgttcacttcgtttttgtggtttaaaattatctttaagttctgagcattgttttagt-tagtattttttaatttttattcttatctttgtgacagATTGCAACAGCTCTGTTCGCAAATTCTCCCTTCACGGAAGGGAAGCCGAATGGTTTTTTGAGCTTCAGGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattagggaatttgttcagtgctgtgtgatgtaatcaatgttatctttatgacagATAGCAACGGCTCTTTTTGCAAATTCACCCTTTAAAGAGGGAAAGCCAAATGGTTTTTTCAGTATGAGAAG
ttatcttt CT-rich tract
aatgttatctttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagaaatgttaacaatttcttttcaattgtttttattagggaatttgttcagtgctgtgtgatgtaatcaatgttatctttatgacagATAGCAACGGCTCTTTTTGCAAATTCACCCTTTAAAGAGGGAAAGCCAAATGGTTTTTTCAGTATGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG