Sequence
atgc intronic sequence ATGC exonic sequencegtgggtaatctgcttctgtaacttattttgcatgtttcctttctgcgggtattgtaaacaccaagtgggcatgtagGTTCGGATTGTCCTGGAAGGTGTTGATAAGTACAACAATTTGATTGGGTCAGTGTATTATCCTGATGGTGACTCAGCAAAAGACCTGGCATTGGAGCTTA
Basic information
species | Glycine max |
transcript | GLYMA08G00910.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G00910.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G61780.1 (Arabidopsis thaliana), 3'ss of exon 7
gtgggtaatctgcttctgtaacttattttgcatgtttcctttctgcgggtattgtaaacaccaagtgggc------atgtagGTTCGGATTGTCCTGGAAGGTGTTGATAAGTACAACAATTTGATTGGGTCAGTGTATTATCCTGATGGTGACTCAGCAAAAGACCTGGCATTGGAGCTTA
|| | | | | | || ||| || || || || | | | | | | | || || || ||||||| ||||| || ||||| ||||| |||| ||||||| ||||||||||||| || ||| | ||||| || ||| |||||| ||| ||||||||
gtaaggaggtt-ttacaacaaattaacttacacgtatctgtatttgacatttagatgatctaagttgagctggattgtgcagGTTCGTATTGTTCTTGAAGGCGTTGACAAGTTCAACAATCTGATTGGGTCAGTATACTATTCCGATGGGGATACAGTTAAAGACTTGGGTTTGGAGCTGG
upper sequence: GLYMA08G00910.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 3'ss of exon 7
gtgggtaatctgcttctgt-----aacttat----tttgcatgtttcctttctgcgggtattgtaaacaccaagtgggcatgtagGTTCGGATTGTCCTGGAAGGTGTTGATAAGTACAACAATTTGATTGGGTCAGTGTATTATCCTGATGGTGACTCAGCAAAAGACCTGGCATTGGAGCTTA
||| |||| | | | | |||| | ||||||| | | | | || || | | | |||| || || || | ||||||||||| || | ||||||||| || ||||| |||||||| |||||||| |||||||| ||||| ||| ||||||||
gtgagtaaatttatcttatcaaatgacttgtcatttttgcatttgattgtctttagatggtttcaattaatggtggaatttacagGTCCGTATCGTATTAGAAGGTGTTGACAAATTTGGCAATTTGATCGGTTCAGTATATTATCCCGATGGTGAATCAGCAAAGGACCTAGCACTGGAGCTTG
upper sequence: GLYMA08G00910.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 3'ss of exon 6
-------------------gtgggtaatctgcttctgtaactt-attttgcatgtttcctttctgcgggtattgtaaacaccaagtggg--catgtagGTTCGGATTGTCCTGGAAGGTGTTGATAAGTACAACAATTTGATTGGGTCAGTGTATTATCCTGATGGTGACTCAGCAAAAGACCTGGCATTGGAGCTTA
| | | | | ||| ||| ||| ||| | | || | | | || | | | || | || | ||||| || ||||| ||||| || ||||| || || | ||| | ||||| ||||||||||||||||||||||| |||||||| || |||||| ||||||||
gtcagtaaatttcttctttgagaatgaattccttgtgtttctttgtttcgttttatttttatttttacacgttctcagcttcatgctggattctatagGTACGCATTGTTCTGGAGGGAGTTGACAAATATAGCAACCTAATTGGTTCAGTGTATTATCCTGATGGTGATTCAGCAAAGGATCTGGCACTGGAGCTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttattttgcatgtttcctttctgcgggtattgtaaacaccaagtgggcatgtagGTTCGGATTGTCCTGGAAGGTGTTGATAAGTACAACAATTTGATTGGGTCAGTGTATTATCCTGATGGTGACTCAGCAAAAGACCTGGCATTGGAGCTTA
tattgtaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgggtaatctgcttctgtaacttattttgcatgtttcctttctgcgggtattgtaaacaccaagtgggcatgtagGTTCGGATTGTCCTGGAAGGTGTTGATAAGTACAACAATTTGATTGGGTCAGTGTATTATCCTGATGGTGACTCAGCAAAAGACCTGGCATTGGAGCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT