1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tctgcctattgactcctgacatgtccgctcaaaactatcagggcatcattctgttcacttgaaaagaccccttttttaattgtttgcaataatcacacagGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAACCACAGACATTTGCTCAATGTACACAAAGTGTGAAGGATGGGGGAAAAG
species | Glycine max |
transcript | GLYMA08G00740.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATACTT GAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAAEST: gi|254330135|gb|GR839688.1|GR839688
genomic: CTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATACTTgtatgcacat ... aatcacacagGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAA
EST: CTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATACTT GAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAAEST: gi|254329031|gb|GR833403.1|GR833403
genomic: CTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATACTTgtatgcacat ... aatcacacagGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAA
EST: CACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATACTT GAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAAEST: gi|254332624|gb|GR843994.1|GR843994
genomic: CACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATACTTgtatgcacat ... aatcacacagGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAA
EST: CTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATACTT GAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAA
genomic: CTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATACTTgtatgcacat ... aatcacacagGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAA
tcattctgttcacttgaaaagaccccttttttaattgtttgcaataatcacacagGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAACCACAGACATTTGCTCAATGTACACAAAGTGTGAAGGATGGGGGAAAAG
ttttaat putative branch site (score: 3)
ttttttaattgtttgc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgcctattgactcctgacatgtccgctcaaaactatcagggcatcattctgttcacttgaaaagaccccttttttaattgtttgcaataatcacacagGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAACCACAGACATTTGCTCAATGTACACAAAGTGTGAAGGATGGGGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG