Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgtttttgtatacaacttagttgcttacaatgcttaaactgagtttgtaacgatgatcttttgttctgatatcatgcaatactttggctttgcttacagATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGATGATCCTCAGGGAAAGGTTGGTGTGACGGGAAGTGGGAAAGGTTTGACAG

Basic information

species Glycine max
transcript GLYMA07G40240.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40240.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G02570.3 (Arabidopsis thaliana), 3'ss of exon 8
gtgtttttgtatacaacttagttgcttacaatgcttaaactgagtttgtaacgatgatcttttgttctgatatcatgcaatactttggctttgcttacagATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGATGATCCTCAGGGAAAGGTTGGTGTGACGGGAAGTGGGAAAGGTTTGACAG
                       | ||   |       | |   | ||   |  || ||| ||| |  |  ||  ||  |    ||    |||  | ||| | || |||||| | || || ||    |||||||| |||||||| ||||| |||||    ||||| || |||||||| ||||||||||||||||||||||
-----------------------gtttgttagatacggaattcatatggctctttgttctcttggtg-gggattctgagacgggttttggttg--tgcagGTAGGGTTCTTCACAGGGAGGAAGAAAGAGAGTATATTTAAATCACCTGAGGATCCATTTGGAAAAGTGGGTGTGACTGGAAGTGGGAAAGGTTTGACAG

upper sequence: GLYMA07G40240.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0035g01830.t01 (Vitis vinifera), 3'ss of exon 8
gtgtttttgtatac-aacttagttgcttacaatgcttaaactgagtttgtaacgatgatcttttgttctgatatcatgcaatactttggctttgcttacagATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGATGATCCTCAGGGAAAGGTTGGTGTGACGGGAAGTGGGAAAGGTTTGACAG
 |  ||   | |   | |||   | ||  |  || |  |  ||  | |   ||     | || | ||||  | |    |  || | ||  |    |  |||||||||||||| || ||  | || || || || || || || ||||||||||||||  | || |||||||||||||| ||||| |||||||| |||||||
-tccttcactctgttagcttttgtcctacctttgatctacatggctcttataccccttttttcttttcttctttgtatctgtaatgtgtttaaattcccagATTGGTTTCTTTTCGGGCCGCAAGCGAGAAAGCATCTTCAAGTCTCCTGATGATCCAAACGGCAAGGTTGGTGTGACTGGAAGCGGGAAAGGATTGACAG

upper sequence: GLYMA07G40240.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S59_369V6.1 (Physcomitrella patens), 3'ss of exon 8
--------------------------------gtgtttttgtatacaacttagttgcttacaatgcttaaactgagtttgtaacgatgatcttttgttctgatatcatgcaatactttggctttgcttacag-
                                   | ||   || || | |  | ||    | ||      ||  ||| ||      |  |   |||||| || |     | |   |||| ||| ||| |||      || |||||| | ||  | ||| ||||||||||||| |||||||||||||||||| |||||||||| || || || || ||||| |||||    |   
gtaagtggtaatgtgttttatattacttacaaccttattctcatccagcatgatggcagcaagtgtgcgggcttggtt-gttgtttcggcccactgttctaatgtagcttattgtgttgg-tttacttgcagCAAGGAGGATTCTTCACAGGGCGCAAAAGGGAGAGTATTTTCAAATCTCCTGATGATCCTAAGGGAAAGGTAGGCGTCACAGGTAGTGGAAAAGGGACCA---

upper sequence: GLYMA07G40240.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S51_234V6.1 (Physcomitrella patens), 3'ss of exon 7
gtgtttttgtatacaacttagttgcttacaatgcttaaactgagtttgt----------aacgatgatcttttgtt-ctgatatcatgcaatactttggctttgc--ttacagATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGATGATCCTCAGGGAAAGGTTGGTGTGACGGGAAGTGGGAAAGGTTTGACAG
      ||    |    ||| ||  |||| || |  ||||| ||| |||          ||| |          ||  | || |   ||| |   |    |||       ||  | || |||||| | ||  | ||| ||||||||||||||||| |||| ||||||||| |||| ||||| ||||| || || || || |||||        
------ttaaggatt-tttaattcattactatccaaaaactcagtgtgtcattttcctgaacaaccgctgcccattattaatttggcgcattgtgtgaattttctagCAGCAAGTGGGGTTCTTCACGGGGCGTAAAAGGGAGAGTATTTTTAAAACTCCGGATGATCCTAAGGGGAAGGTAGGTGTCACAGGTAGCGGAAAAGGAA------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254323191|gb|GR835799.1|GR835799
EST:     GGCAAAATGCTTGGCAGCAATTTCAGTCAACCAAAGGAAAGGCAAAGAAG                         ATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGAT
genomic: GGCAAAATGCTTGGCAGCAATTTCAGTCAACCAAAGGAAAGGCAAAGAAGgtacctttct ... ttgcttacagATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGAT
EST: gi|151393165|gb|EV263040.1|EV263040
EST:     GGCAAAATGCTTGGCAGCAATTTCAGTCAACCAAAGGAAAGGCAAAGAAG                         ATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGAT
genomic: GGCAAAATGCTTGGCAGCAATTTCAGTCAACCAAAGGAAAGGCAAAGAAGgtacctttct ... ttgcttacagATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGAT
EST: gi|192334367|gb|FK025544.1|FK025544
EST:     GGCAAAATGCTTGGCAGCAATTTCAGTCAACCAAAGGAAAGGCAAAGAAG                         ATTGGNNNNNNNNNNGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGAT
genomic: GGCAAAATGCTTGGCAGCAATTTCAGTCAACCAAAGGAAAGGCAAAGAAGgtacctttct ... ttgcttacagATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtaacgatgatcttttgttctgatatcatgcaatactttggctttgcttacagATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGATGATCCTCAGGGAAAGGTTGGTGTGACGGGAAGTGGGAAAGGTTTGACAG
                                           ctttgctt  CT-rich tract
                                 aatacttt  TA-rich tract